All Faculty and Research Staff Publications

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McDaniel JG, Yethiraj A. Influence of Electronic Polarization on the Structure of Ionic Liquids. Journal of Physical Chemistry Letters. 2018 ;9:4765-4770.
Dutta A, Tyminska N, Zhu GH, Collins J, Lively RP, Schmidt JR, Vasenkov S. Influence of Hydrogen Sulfide Exposure on the Transport and Structural Properties of the Metal-Organic Framework ZIF-8. Journal of Physical Chemistry C. 2018 ;122:7278-7287.
Han C, Zhang CY, Tyminska N, Schmidt JR, Sholl DS. Insights into the Stability of Zeolitic Imidazolate Frameworks in Humid Acidic Environments from First-Principles Calculations. Journal of Physical Chemistry C. 2018 ;122:4339-4348.
McGeachy AC, Dalchand N, Caudill ER, Li T, Dogangun M, Olenick LL, Chang H, Pedersen JA, Geiger FM. Interfacial electrostatics of poly( vinylamine hydrochloride), poly( diallyldimethylammonium chloride), poly-L-lysine, and poly-L-arginine interacting with lipid bilayers. Physical Chemistry Chemical Physics. 2018 ;20:10846-10856.
Rajeev A, Chen WX, Kirch JD, Babcock SE, Kuech TF, Earles T, Mawst LJ. Interfacial Mixing Analysis for Strained Layer Superlattices by Atom Probe Tomography. Crystals. 2018 ;8.
Handali JD, Sunden KF, Kaufman EM, Wright JC. Interference and phase mismatch effects in coherent triple sum frequency spectroscopy. Chemical Physics. 2018 ;512:13-19.
Saraswat V, Jacobberger RM, Ostrander JS, Hummell CL, Way AJ, Wang J, Zanni MT, Arnold MS. Invariance of Water Permeance through Size-Differentiated Graphene Oxide Laminates. Acs Nano. 2018 ;12:7855-7865.
Zhi B, Gallagher MJ, Frank BP, Lyons TY, Qiu TA, Da J, Mensch AC, Hamers RJ, Rosenzweig Z, Fairbrother DH, et al. Investigation of phosphorous doping effects on polymeric carbon dots: Fluorescence, photostability, and environmental impact. Carbon. 2018 ;129:438-449.
Alderson JM, Corbin JR, Schomaker JM. Investigation of transition metal-catalyzed nitrene transfer reactions in water. Bioorganic & Medicinal Chemistry. 2018 ;26:5270-5273.
Jackson GL, Mantha S, Kim SA, Diallo SO, Herwig KW, Yethiraj A, Mahanthappa MK. Ion-specific Confined Water Dynamics in Convex Nanopores of Gemini Surfactant Lyotropic Liquid Crystals. J Phys Chem B. 2018 :In press.
Zhu ZP, Wang HY, Simmons C, Tseng PS, Qiu X, Zhang Y, Duan XY, Yang JK, Tang WP. Iridium-Catalyzed Dynamic Kinetic Stereoselective Allylic Etherification of Achmatowicz Rearrangement Products. Advanced Synthesis & Catalysis. 2018 ;360:595-599.
Liu JT, Yang SY, Tang WP, Yang ZH, Xu JX. Iridium-catalyzed efficient reduction of ketones in water with formic acid as a hydride donor at low catalyst loading. Green Chemistry. 2018 ;20:2118-2124.
Yang SY, Tang WP, Yang ZH, Xu JX. Iridium-Catalyzed Highly Efficient and Site-Selective Deoxygenation of Alcohols. Acs Catalysis. 2018 ;8:9320-9326.
Voss JM, Kregel SJ, Fischer KC, Garand E. IR-IR Conformation Specific Spectroscopy of Na+(Glucose) Adducts. Journal of the American Society for Mass Spectrometry. 2018 ;29:42-50.
Mitok KA, Freiberger EC, Schueler KL, Rabaglia ME, Stapleton DS, Kwiecien NW, Malec PA, Hebert AS, Broman AT, Kennedy RT, et al. Islet proteomics reveals genetic variation in dopamine production resulting in altered insulin secretion. Journal of Biological Chemistry. 2018 ;293:5860-5877.
Wang YH, Goldsmith ZK, Schneider PE, Anson CW, Gerken JB, Ghosh S, Hammes-Schiffer S, Stahl SS. Kinetic and Mechanistic Characterization of Low-Overpotential, H2O2-Selective Reduction of O-2 Catalyzed by N2O2-Ligated Cobalt Complexes. Journal of the American Chemical Society. 2018 ;140:10890-10899.
Varela AE, Lang JF, Wu YF, Dalphin MD, Stangl AJ, Okuno Y, Cavagnero S. Kinetic Trapping of Folded Proteins Relative to Aggregates under Physiologically Relevant Conditions. Journal of Physical Chemistry B. 2018 ;122:7682-7698.
Ma FF, Sun RX, Tremmel DM, Sacket SD, Odorico J, Li LJ. Large-Scale Differentiation and Site Specific Discrimination of Hydroxyproline Isomers by Electron Transfer/Higher-Energy Collision Dissociation (EThcD) Mass Spectrometry. Analytical Chemistry. 2018 ;90:5857-5864.
Yao M, Chen BM, Zhao WP, Mehl JT, Li LJ, Zhu MS. LC-MS Differential Analysis for Fast and Sensitive Determination of Biotransformation of Therapeutic Proteins. Drug Metabolism and Disposition. 2018 ;46:451-457.
Shea MJ, Wang JL, Flach JT, Zanni MT, Arnold MS. Less severe processing improves carbon nanotube photovoltaic performance. APL Materials. 2018 ;6.
Wang D, Weinstein AB, White PB, Stahl SS. Ligand-Promoted Palladium-Catalyzed Aerobic Oxidation Reactions. Chemical Reviews. 2018 ;118:2636-2679.
Das A, Rahimi A, Ulbrich A, Alherech M, Motagamwala AH, Bhalla A, Sousa LD, Balan V, Dumesic JA, Hegg EL, et al. Lignin Conversion to Low-Molecular-Weight Aromatics via an Aerobic Oxidation-Hydrolysis Sequence: Comparison of Different Lignin Sources. Acs Sustainable Chemistry & Engineering. 2018 ;6:3367-3374.
Wan C, Horak EH, King J, Salman J, Zhang Z, Zhou Y, Roney P, Gundlach B, Ramanathan S, Goldsmith RH, et al. Limiting Optical Diodes Enabled by the Phase Transition of Vanadium Dioxide. ACS Photonics. 2018 ;5:2688-2692.
Olenick LL, Troiano JM, Vartanian A, Melby ES, Mensch AC, Zhang LL, Hong JW, Mesele O, Qiu T, Bozich J, et al. Lipid Corona Formation from Nanoparticle Interactions with Bilayers. Chem. 2018 ;4:2709-2723.
Hutchins PD, Russell JD, Coon JJ. LipiDex: An Integrated Software Package for High-Confidence Lipid Identification. Cell Systems. 2018 ;6:621-+.
Nayani K, Rai P, Bao NQ, Yu HZ, Mavrikakis M, Twieg RJ, Abbott NL. Liquid Crystals with Interfacial Ordering that Enhances Responsiveness to Chemical Targets. Advanced Materials. 2018 ;30.
Cesnik AJ, Yang B, Truong A, Etheridge T, Spiniello M, Steinbrink MI, Shortreed MR, Frey BL, Jarrard DF, Smith LM. Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers. Transl Oncol. 2018 ;11:808-814.
Cao Y, Yu H, Abbott NL, Zavala VM. Machine Learning Algorithms for Liquid Crystal-Based Sensors. ACS Sensors. 2018 ;3:2237-2245.
Zhi B, Cui Y, Wang SY, Frank BP, Williams DN, Brown RP, Melby ES, Hamers RJ, Rosenzweig Z, Fairbrother DH, et al. Malic Acid Carbon Dots: From Super-resolution Live-Cell Imaging to Highly Efficient Separation. Acs Nano. 2018 ;12:5741-5752.
Hinton DA, Ng JD, Sun J, Lee S, Saikin SK, Logsdon J, White DS, Marquard AN, Cavell AC, Krasecki VK, et al. Mapping Forbidden Emission to Structure in Self-Assembled Organic Nanoparticles. Journal of the American Chemical Society. 2018 ;140:15827-15841.
Buchberger AR, DeLaney K, Johnson J, Li LJ. Mass Spectrometry Imaging: A Review of Emerging Advancements and Future Insights. Analytical Chemistry. 2018 ;90:240-265.
Trivedi RR, Crooks JA, Auer GK, Pendry J, Foik IP, Siryaporn A, Abbott NL, Gitai Z, Weibel DB. Mechanical Genomic Studies Reveal the Role of d-Alanine Metabolism in Pseudomonas aeruginosa Cell Stiffness. Mbio. 2018 ;9.
Wysoczynski-Horita CL, Boursier ME, Hill R, Hansen K, Blackwell HE, Churchill MEA. Mechanism of agonism and antagonism of the Pseudomonas aeruginosa quorum sensing regulator QscR with non-native ligands. Molecular MicrobiologyMolecular Microbiology. 2018 ;108:240-257.
Mannel DS, King J, Preger Y, Ahmed MS, Root TW, Stahl SS. Mechanistic Insights into Aerobic Oxidative Methyl Esterification of Primary Alcohols with Heterogeneous PdBiTe Catalystsy. Acs Catalysis. 2018 ;8:1038-1047.
Hermes ED, Janes AN, Schmidt JR. Mechanistic Insights into Solution-Phase Oxidative Esterification of Primary Alcohols on Pd(111) from First-Principles Microkinetic Modeling. ACS Catalysis. 2018 ;8:272-282.
Smart TJ, Cardiel AC, Wu F, Choi KS, Ping Y. Mechanistic insights of enhanced spin polaron conduction in CuO through atomic doping. Npj Computational Materials. 2018 ;4.
Yang ZL, Choi H, Weisshaar JC. Melittin-Induced Permeabilization, Re-sealing, and Re-permeabilization of E-coli Membranes. Biophysical Journal. 2018 ;114:368-379.
Tansukawat ND, See AE, Jiranuntarat S, Corbin JR, Schomaker JM. Method for Small-Scale Production of Deuterochloroform. Journal of Organic Chemistry. 2018 ;83:8739-8742.
Galligan JJ, Wepy JA, Streeter MD, Kingsley PJ, Mitchener MM, Wauchope OR, Beavers WN, Rose KL, Wang T, Spiegel DA, et al. Methylglyoxal-derived posttranslational arginine modifications are abundant histone marks. Proceedings of the National Academy of Sciences of the United States of America. 2018 ;115:9228-9233.
Krerowicz SJW, Hernandez-Ortiz JP, Schwartz DC. Microscale Objects via Restructuring of Large, Double-Stranded DNA Molecules. ACS Applied Materials & Interfaces. 2018 ;10:41215-41223.
Plummer IH, Johnson CJ, Chesney AR, Pedersen JA, Samuel MD. Mineral licks as environmental reservoirs of chronic wasting disease prions. PLoS One. 2018 ;13.
Mohapatra S, Weisshaar JC. Modified Pearson correlation coefficient for two-color imaging in spherocylindrical cells. Bmc Bioinformatics. 2018 ;19.
Vakirlis N, Hebert AS, Opulente DA, Achaz G, Hittinger CT, Fischer G, Coon JJ, Lafontaine I. A Molecular Portrait of De Novo Genes in Yeasts. Molecular Biology and Evolution. 2018 ;35:631-645.
Martin-Garrido A, Biesiadecki BJ, Salhi HE, Shaifta Y, Remedios CG dos, Ayaz-Guner S, Cai WX, Ge Y, Avkiran M, Kentish JC. Monophosphorylation of cardiac troponin-I at Ser-23/24 is sufficient to regulate cardiac myofibrillar Ca2+ sensitivity and calpain-induced proteolysis. Journal of Biological Chemistry. 2018 ;293:8588-8599.
Fu YP, Zheng WH, Wang XX, Hautzinger MP, Pan DX, Dang LN, Wright JC, Pan AL, Jin S. Multicolor Heterostructures of Two-Dimensional Layered Halide Perovskites that Show Interlayer Energy Transfer. Journal of the American Chemical Society. 2018 ;140:15675-15683.
Yang Y, Culpitt T, Hammes-Schiffer S. Multicomponent Time-Dependent Density Functional Theory: Proton and Electron Excitation Energies. Journal of Physical Chemistry Letters. 2018 ;9:1765-1770.
Zhang YZ, DeLaney K, Hui LM, Wang JH, Sturm RM, Li LJ. A Multifaceted Mass Spectrometric Method to Probe Feeding Related Neuropeptide Changes in Callinectes sapidus and Carcinus maenas. Journal of the American Society for Mass Spectrometry. 2018 ;29:948-960.
Lapointe CP, Stefely JA, Jochem A, Hutchins PD, Wilson GM, Kwiecien NW, Coon JJ, Wickens M, Pagliarini DJ. Multi-omics Reveal Specific Targets of the RNA-Binding Protein Puf3p and Its Orchestration of Mitochondrial Biogenesis. Cell Systems. 2018 ;6:125-+.
Overmyer KA, Tyanova S, Hebert AS, Westphall MS, Cox J, Coon JJ. Multiplexed proteome analysis with neutron-encoded stable isotope labeling in cells and mice. Nature Protocols. 2018 ;13:293-306.