All Faculty and Research Staff Publications

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2018
Riley NM, Coon JJ. The Role of Electron Transfer Dissociation in Modern Proteomics. Analytical Chemistry. 2018 ;90:40-64.
Rengifo E, Gomez S, Arce JC, Weinhold F, Restrepo A. The role of hyperconjugation in the unusual conformation of thymine: A natural bond orbital analysis. Computational and Theoretical Chemistry. 2018 ;1130:58-62.
Bertram TH, Cochran RE, Grassian VH, Stone EA. Sea spray aerosol chemical composition: elemental and molecular mimics for laboratory studies of heterogeneous and multiphase reactions. Chemical Society Reviews. 2018 ;47:2374-2400.
Lennox AJJ, Nutting JE, Stahl SS. Selective electrochemical generation of benzylic radicals enabled by ferrocene-based electron-transfer mediators. Chemical Science. 2018 ;9:356-361.
Azuma K, Sung J, Choo Y, Rokhlenko Y, Dwyer JH, Schweitzer B, Hayakawa T, Osuji CO, Gopalan P. Self-Assembly of an Ultrahigh-chi Block Copolymer with Versatile Etch Selectivity. Macromolecules. 2018 ;51:6460-6467.
Lavi A, Vermeuel MP, Novak GA, Bertram TH. The sensitivity of benzene cluster cation chemical ionization mass spectrometry to select biogenic terpenes. Atmospheric Measurement Techniques. 2018 ;11:3251-3262.
Riley NM, Westphall MS, Coon JJ. Sequencing Larger Intact Proteins (30-70 kDa) with Activated Ion Electron Transfer Dissociation. Journal of the American Society for Mass Spectrometry. 2018 ;29:140-149.
Jung H, Yethiraj A. A simulation method for the phase diagram of complex fluid mixtures. Journal of Chemical Physics. 2018 ;148.
Mustafi M, Weisshaar JC. Simultaneous Binding of Multiple EF-Tu Copies to Translating Ribosomes in Live Escherichia coli. Mbio. 2018 ;9.
Han SL, Lv YN, Kong LY, Sun YM, Fu J, Li LJ, He LC. Simultaneous identification of the anaphylactoid components from traditional Chinese medicine injections using rat basophilic leukemia 2H3 and laboratory of allergic disease 2 dual-mixed/cell membrane chromatography model. Electrophoresis. 2018 ;39:1181-1189.
Kim H, Kim K, Guan YX, Lee J, Kuech TF, Mawst LJ. Single junction solar cell employing strain compensated GaAs0.965Bi0.035/GaAs0.75P0.25 multiple quantum wells grown by metal organic vapor phase epitaxy. Applied Physics Letters. 2018 ;112.
Knapper KA, Pan F, Rea MT, Horak EH, Rogers JD, Goldsmith RH. Single-particle photothermal imaging via inverted excitation through high-Q all-glass toroidal microresonators. Optics Express. 2018 ;26:25020-25030.
Chen ZW, Yu Q, Hao L, Liu FB, Johnson J, Tian ZC, Kao WJ, Xu W, Li LJ. Site-specific characterization and quantitation of N-glycopeptides in PKM2 knockout breast cancer cells using DiLeu isobaric tags enabled by electron-transfer/higher-energy collision dissociation (EThcD). Analyst. 2018 ;143:2508-2519.
Maj M, Lomont JP, Rich KL, Alperstein AM, Zanni MT. Site-specific detection of protein secondary structure using 2D IR dihedral indexing: a proposed assembly mechanism of oligomeric hIAPP. Chemical Science. 2018 ;9:463-474.
Santos TMA, Lammers MG, Zhou MQ, Sparks IL, Rajendran M, Fang D, De Jesus CLY, Carneiro GFR, Cui Q, Weibel DB. Small Molecule Chelators Reveal That Iron Starvation Inhibits Late Stages of Bacterial Cytokinesis. ACS Chemical Biology. 2018 ;13:235-246.
Lomont JP, Rich KL, Maj M, Ho JJ, Ostrander JS, Zanni MT. Spectroscopic Signature for Stable beta-Amyloid Fibrils versus beta-Sheet-Rich Oligomers. Journal of Physical Chemistry B. 2018 ;122:144-153.
Stracey NG, Costa FG, Escalante-Semerena JC, Brunold TC. Spectroscopic Study of the EutT Adenosyltransferase from Listeria monocytogenes: Evidence for the Formation of a Four-Coordinate Cob(II)alamin Intermediate. Biochemistry. 2018 ;57:5088-5095.
Garand E. Spectroscopy of Reactive Complexes and Solvated Clusters: A Bottom-Up Approach Using Cryogenic Ion Traps. Journal of Physical Chemistry A. 2018 ;122:6479-6490.
Brown SP, Blackwell HE, Hammer BK. The State of the Union Is Strong: a Review of ASM's 6th Conference on Cell-Cell Communication in Bacteria. Journal of Bacteriology. 2018 ;200.
van der Feltz C, DeHaven AC, Hoskins AA. Stress-induced Pseudouridylation Alters the Structural Equilibrium of Yeast U2 snRNA Stem II. Journal of Molecular Biology. 2018 ;430:524-536.
O'Reilly MC, Dong SH, Rossi FM, Karlen KM, Kumar RS, Nair SK, Blackwell HE. Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop "Out'' Conformation for LasR. Cell Chemical Biology. 2018 ;25:1128-+.
Gerken JB, Pang YTQ, Lauber MB, Stahl SS. Structural Effects on the pH-Dependent Redox Properties of Organic Nitroxyls: Pourbaix Diagrams for TEMPO, ABNO, and Three TEMPO Analogs. Journal of Organic Chemistry. 2018 ;83:7323-7330.
Boursier ME, Moore JD, Heitman KM, Shepardson-Fungairino SP, Combs JB, Koenig LC, Shin D, Brown EC, Nagarajan R, Blackwell HE. Structure-Function Analyses of the N-Butanoyl L-Homoserine Lactone Quorum-Sensing Signal Define Features Critical to Activity in RhIR. ACS Chemical Biology. 2018 ;13:2655-2662.
Stilwell MD, Cao MY, Goodrich-Blair H, Weibel DB. Studying the Symbiotic Bacterium Xenorhabdus nematophila in Individual, Living Steinernema carpocapsae Nematodes Using Microfluidic Systems. Msphere. 2018 ;3.
Wei W, Balamurugan A, Dwyer JH, Gopalan P. Substrate-Independent Approach to Dense Cleavable Polymer Brushes by Nitroxide-Mediated Polymerization. Acs Macro Letters. 2018 ;7:100-104.
Rytz TC, Miller MJ, McLoughlin F, Augustine RC, Marshall RS, Juan YT, Charng YY, Scalf M, Smith LM, Vierstra RD. SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 during Heat Stress. Plant Cell. 2018 ;30:1077-1099.
2018
Leng MY, Yang Y, Chen ZW, Gao WR, Zhang J, Niu GD, Li DB, Song HS, Zhang JB, Jin S, et al. Surface Passivation of Bismuth-Based Perovskite Variant Quantum Dots To Achieve Efficient Blue Emission. Nano Letters. 2018 ;18:6076-6083.
Ma FF, Liu FB, Xu W, Li LJ. Surfactant and Chaotropic Agent Assisted Sequential Extraction/On-Pellet Digestion (SCAD) for Enhanced Proteomics. Journal of Proteome Research. 2018 ;17:2744-2754.
He JY, Burt SP, Ball M, Zhao DT, Hermans I, Dumesic JA, Huber GW. Synthesis of 1,6-Hexanediol from Cellulose Derived Tetrahydrofuran-Dimethanol with Pt-WOx/TiO2 Catalysts. Acs Catalysis. 2018 ;8:1427-1439.
Minelli M, Hart-Cooper W, Sinnwell JG, Blumberg DT, Guzei IA, Spencer LC, Vazquez JPS, Peralta AS, Torres MS. Synthesis, structure, and characterization of molybdenum(VI) imido complexes with N-salicylidene-2-aminothiophenol. Polyhedron. 2018 ;146:26-34.
Jha P, McDevitt MT, Gupta R, Quiros PM, Williams EG, Gariani K, Sleiman MB, Diserens L, Jochem A, Ulbrich A, et al. Systems Analyses Reveal Physiological Roles and Genetic Regulators of Liver Lipid Species. Cell Systems. 2018 ;6:722-+.
Chen BM, Zhong XF, Feng Y, Snovida S, Xu M, Rogers J, Li LJ. Targeted MultiNotch MS3 Approach for Relative Quantification of N-Glycans Using Multiplexed Carbonyl-Reactive Isobaric Tags. Analytical Chemistry. 2018 ;90:1129-1135.
Cai WX, Hite ZL, Lyu BN, Wu ZJ, Lin ZQ, Gregorich ZR, Messer AE, McIlwain SJ, Marston SB, Kohmoto T, et al. Temperature-sensitive sarcomeric protein post-translational modifications revealed by top-down proteomics. Journal of Molecular and Cellular Cardiology. 2018 ;122:11-22.
Cai W, Hite ZL, Lyu B, Wu Z, Lin Z, Gregorich ZR, Messer AE, McIlwain SJ, Marston SB, Kohmoto T, et al. Temperature-sensitive sarcomeric protein post-translational modifications revealed by top-down proteomics. Journal of Molecular and Cellular Cardiology. 2018 ;122:11-22.
Nutting JE, Rafiee M, Stahl SS. Tetramethylpiperidine N-Oxyl (TEMPO), Phthalimide N-Oxyl (PINO), and Related N-Oxyl Species: Electrochemical Properties and Their Use in Electrocatalytic Reactions. Chemical Reviews. 2018 ;118:4834-4885.
Weinhold F. Theoretical Prediction of Robust Second-Row Oxyanion Clusters in the Metastable Domain of Antielectrostatic Hydrogen Bonding. Inorganic Chemistry. 2018 ;57:2035-2044.
Fisher BF, Hong SH, Gellman SH. Thermodynamic Scale of beta-Amino Acid Residue Propensities for an alpha-Helix-like Conformation. Journal of the American Chemical Society. 2018 ;140:9396-9399.
Rush MJP, Riley NM, Westphall MS, Coon JJ. Top-Down Characterization of Proteins with Intact Disulfide Bonds Using Activated-Ion Electron Transfer Dissociation. Analytical Chemistry. 2018 ;90:8946-8953.
Chen BF, Brown KA, Lin ZQ, Ge Y. Top-Down Proteomics: Ready for Prime Time?. Analytical Chemistry. 2018 ;90:110-127.
Seok SH, Ma ZX, Feltenberger JB, Chen HB, Chen H, Scarlett C, Lin ZQ, Satyshur KA, Cortopassi M, Jefcoate CR, et al. Trace derivatives of kynurenine potently activate the aryl hydrocarbon receptor (AHR). Journal of Biological Chemistry. 2018 ;293:1994-2005.
Zhu M, Yu L. Trans-cis isomerization energies of azopyridines: a calorimetric and computational study. Journal of Thermal Analysis and Calorimetry. 2018 ;132:463-469.
2018
Luo GF, Kuech TF, Morgan D. Transition state redox during dynamical processes in semiconductors and insulators. NPG Asia Materials. 2018 ;10:45-51.
Mi HY, Jing X, Meador MAB, Guo HQ, Turng LS, Gong S. Triboelectric Nanogenerators Made of Porous Polyamide Nanofiber Mats and Polyimide Aerogel Film: Output Optimization and Performance in Circuits. ACS Applied Materials & Interfaces. 2018 ;10:30596-30606.
Petti MK, Lomont JP, Maj M, Zanni MT. Two-Dimensional Spectroscopy Is Being Used to Address Core Scientific Questions in Biology and Materials Science. Journal of Physical Chemistry B. 2018 ;122:1771-1780.
Millikin RJ, Solntsev SK, Shortreed MR, Smith LM. Ultrafast Peptide Label-Free Quantification with FlashLFQ. Journal of Proteome Research. 2018 ;17:386-391.
Shishkova E, Hebert AS, Westphall MS, Coon JJ. Ultra-High Pressure (>30,000 psi) Packing of Capillary Columns Enhancing Depth of Shotgun Proteomic Analyses. Analytical Chemistry. 2018 ;90:11503-11508.
Forse AC, Gonzalez MI, Siegelman RL, Witherspoon VJ, Jawahery S, Mercado R, Milner PJ, Martell JD, Smit B, Blumich B, et al. Unexpected Diffusion Anisotropy of Carbon Dioxide in the Metal-Organic Framework Zn-2(dobpdc). Journal of the American Chemical Society. 2018 ;140:1663-1673.
Chen GJ, Ma B, Wang YY, Gong S. A Universal GSH-Responsive Nanoplatform for the Delivery of DNA, mRNA, and Cas9/sgRNA Ribonucleoprotein. ACS Applied Materials & Interfaces. 2018 ;10:18515-18523.

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