All Faculty and Research Staff Publications

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2000
Fei ZD, Smith LM. Analysis of single nucleotide polymorphisms by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry. 2000 ;14:950-959.
Scalf M, Westphall MS, Smith LM. Charge reduction electrospray mass spectrometry. Analytical Chemistry. 2000 ;72:52-60.
Ebeling DD, Westphall MS, Scalf M, Smith LM. Corona discharge in charge reduction electrospray mass spectrometry. Analytical Chemistry. 2000 ;72:5158-5161.
Strother T, Hamers RJ, Smith LM. Covalent attachment of oligodeoxyribonucleotides to amine-modified Si (001) surfaces. Nucleic Acids Research. 2000 ;28:3535-3541.
Liu QH, Wang LM, Frutos AG, Condon AE, Corn RM, Smith LM. DNA computing on surfaces. Nature. 2000 ;403:175-179.
Griffin TJ, Smith LM. Genetic identification by mass spectrometric analysis of single-nucleotide polymorphisms: Ternary encoding of genotypes. Analytical Chemistry. 2000 ;72:3298-3302.
Gillmor SD, Thiel AJ, Strother TC, Smith LM, Lagally MG. Hydrophilic/hydrophobic patterned surfaces as templates for DNA arrays. Langmuir. 2000 ;16:7223-7228.
Wang LM, Liu QH, Corn RM, Condon AE, Smith LM. Multiple word DNA computing on surfaces. Journal of the American Chemical Society. 2000 ;122:7435-7440.
Griffin TJ, Smith LM. Single-nucleotide polymorphism analysis by MALDI-TOF mass spectrometry. Trends in Biotechnology. 2000 ;18:77-84.
Chen X, Smith LM, Bradbury EM. Site-specific mass tagging with stable isotopes in proteins for accurate and efficient protein identification. Analytical Chemistry. 2000 ;72:1134-1143.
Strother T, Cai W, Zhao XS, Hamers RJ, Smith LM. Synthesis and characterization of DNA-modified silicon (111) surfaces. Journal of the American Chemical Society. 2000 ;122:1205-1209.
1999
Scalf M, Westphall MS, Krause J, Kaufman SL, Smith LM. Controlling charge states of large ions. Science. 1999 ;283:194-197.
Griffin TJ, Hall JG, Prudent JR, Smith LM. Direct genetic analysis by matrix-assisted laser desorption/ionization mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 1999 ;96:6301-6306.
Krause J, Scalf M, Smith LM. High resolution characterization of DNA fragment ions produced by ultraviolet matrix-assisted laser desorption/ionization using linear and reflecting time-of-flight mass spectrometry. Journal of the American Society for Mass Spectrometry. 1999 ;10:423-429.
Griffin TJ, Tang W, Smith LM. MALDI-TOF mass spectrometric detection of PNA hybrids for genetic analysis. Pept. Nucleic Acids. 1999 :143-154.
Liu Q, Frutos AG, Wang L, Thiel AJ, Gillmor SD, Strother CT, Condon AE, Corn RM, Lagally MG, Smith LM. Progress toward demonstration of a surface based DNA computation: a one word approach to solve a model satisfiability problem. Biosystems. 1999 ;52:25-33.
Chen X, Fei ZD, Smith LM, Bradbury EM, Majidi V. Stable-isotope-assisted MALDI-TOF mass spectrometry for accurate determination of nucleotide compositions of PCR products. Analytical Chemistry. 1999 ;71:3118-3125.
Liu Q, Guo Z, Fei Z, Condon AE, Corn RM, Lagally MG, Smith LM. A surface-based approach to DNA computation. DNA Based Computers II. DIMACS Workshop. 1999 :123-32.
Wang L, Liu Q, Frutos AG, Gillmor SD, Thiel AJ, Strother TC, Condon AE, Corn RM, Lagally MG, Smith LM. Surface-based DNA computing operations: DESTROY and READOUT. Biosystems. 1999 ;52:189-191.
1997
Ono T, Scalf M, Smith LM. 2'-fluoro modified nucleic acids: polymerase-directed synthesis, properties and stability to analysis by matrix-assisted laser desorption/ionization mass spectrometry. Nucleic Acids Research. 1997 ;25:4581-4588.
Tang W, Zhu L, Smith LM. Controlling DNA Fragmentation in MALDI-MS by Chemical Modification. Analytical Chemistry. 1997 ;69:302-312.
Frutos AG, Liu QH, Thiel AJ, Sanner AMW, Condon AE, Smith LM, Corn RM. Demonstration of a word design strategy for DNA computing on surfaces. Nucleic Acids Research. 1997 ;25:4748-4757.
Mouradian S, Skogen JW, Dorman FD, Zarrin F, Kaufman SL, Smith LM. DNA analysis using an electrospray scanning mobility particle sizer. Analytical Chemistry. 1997 ;69:919-925.
Guo Z, Liu QH, Smith LM. Enhanced discrimination of single nucleotide polymorphisms by artificial mismatch hybridization. Nature Biotechnology. 1997 ;15:331-335.
Tang W, Krause J, Zhu L, Smith LM. Factors influencing oligonucleotide stability in matrix-assisted laser desorption/ionization (MALDI) mass spectroscopy. International Journal of Mass Spectrometry and Ion Processes. 1997 ;169/170:301-311.
Griffin TJ, Tang W, Smith LM. Genetic analysis by peptide nucleic acid affinity MALDI-TOF mass spectrometry. Nature Biotechnology. 1997 ;15:1368-1372.
Thiel AJ, Frutos AG, Jordan CE, Corn RM, Smith LM. In situ surface plasmon resonance imaging detection of DNA hybridization to oligonucleotide arrays on gold surfaces. Analytical Chemistry. 1997 ;69:4948-4956.
Guilfoyle RA, Leeck CL, K. Kroening D, Smith LM, Guo Z. Ligation-mediated PCR amplification of specific fragments from a Class-II restriction endonuclease. Nucleic Acids Research. 1997 ;25:1854-1858.
Tang W, Nelson CM, Zhu L, Smith LM. Positive ion formation in the ultraviolet matrix- assisted laser desorption/ionization analysis of oligonucleotides by using 2,5-dihydroxybenzoic acid. Journal of the American Society for Mass Spectrometry. 1997 ;8:218-224.
1996
Mouradian S, Rank DR, Smith LM. Analyzing sequencing reactions from bacteriophage M13 by matrix-assisted laser desorption/ionization mass spectrometry. Rapid Communications in Mass Spectrometry. 1996 ;10:1475-1478.
Rank D, Smith LM. Automated DNA sequencers: the next generation. Optics and Photonics News. 1996 ;7:29-33.
Yin ZB, Severin J, Giddings MC, Huang WA, Westphall MS, Smith LM. Automatic matrix determination in four dye fluorescence-based DNA sequencing. Electrophoresis. 1996 ;17:1143-1150.
Buxton EC, Westphall M, Jacobson W, Tong XC, Smith LM. Automation in large-scale DNA sequencing. Laboratory Robotics and Automation. 1996 ;8:339-349.
Brow MAD, Oldenburg MC, Lyamichev V, Heisler LM, Grotelueschen J, Lyamicheva N, Kozyavkin S, Fors L, Dahlberg JE, Smith LM, et al. The Cleavase Fragment Length Polymorphism (CFLP) assay. Biochemica. 1996 ;1:14-15.
Brow MAD, Oldenburg MC, Lyamichev V, Heisler LM, Lyamicheva N, Hall JG, Eagan NJ, Olive DM, Smith LM, Fors L, et al. Differentiation of bacterial 16S rRNA genes and intergenic regions and Mycobacterium tuberculosis katG genes by structure-specific endonuclease cleavage. Journal of Clinical Microbiology. 1996 ;34:3129-3137.
Nelson CM, Zhu L, Tang W, Smith LM, Crellin K, Berry J, Beauchamp JL. Fragmentation mechanisms of oligonucleotides in MALDI mass spectrometry. Proceedings of SPIE - The International Society for Optical Engineering. 1996 ;2680:247-255.
Smith LM, Brumley, Jr. RL, Buxton EC, Giddings M, Marchbanks M, Tong X. High-speed automated DNA sequencing in ultrathin slab gels. Methods in Enzymology. 1996 ;271:219-237.
Chen DH, Johnson AF, Severin JM, Rank DR, Smith LM, Guilfoyle RA. M13-102: A vector for facilitating construction and improving quality of M13 shotgun libraries. Gene. 1996 ;172:53-57.
Brow MAD, Oldenburg MC, Lyamichev V, Heisler LM, Grotelueschen J, Lyamicheva N, Kozyavkin S, Fors L, Dahlberg J, Smith LM, et al. Mutation detection by cleavase fragment length polymorphism. Focus. 1996 ;18:2-5.
Johnson AF, Wang RF, Ji HM, Chen DH, Guilfoyle RA, Smith LM. Purification of single-stranded M13 DNA by cooperative triple-helix-mediated affinity capture. Analytical Biochemistry. 1996 ;234:83-95.

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