All Faculty and Research Staff Publications

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2013
Kim DY, Scalf M, Smith LM, Vierstra RD. Advanced Proteomic Analyses Yield a Deep Catalog of Ubiquitylation Targets in Arabidopsis. Plant Cell. 2013 ;25:1523-1540.
Russell JD, Scalf M, Book AJ, Ladror DT, Vierstra RD, Smith LM, Coon JJ. Characterization and Quantification of Intact 26S Proteasome Proteins by Real-Time Measurement of Intrinsic Fluorescence Prior to Top-down Mass Spectrometry. Plos One. 2013 ;8.
Frey BL, Ladror DT, Sondalle SB, Krusemark CJ, Jue AL, Coon JJ, Smith LM. Chemical Derivatization of Peptide Carboxyl Groups for Highly Efficient Electron Transfer Dissociation. Journal of the American Society for Mass Spectrometry. 2013 ;24:1710-1721.
Sheynkman GM, Shortreed MR, Frey BL, Smith LM. Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq. Molecular & Cellular Proteomics. 2013 ;12:2341-2353.
Broderick AH, Carter MCD, Lockett MR, Smith LM, Lynn DM. Fabrication of Oligonucleotide and Protein Arrays on Rigid and Flexible Substrates Coated with Reactive Polymer Multilayers. ACS Applied Materials & Interfaces. 2013 ;5:351-359.
Torde RG, Therrien AJ, Shortreed MR, Smith LM, Lamos SM. Multiplexed Analysis of Cage and Cage Free Chicken Egg Fatty Acids Using Stable Isotope Labeling and Mass Spectrometry. Molecules. 2013 ;18:14977-14988.
Smith LM, Kelleher NL, Down PConsortium. Proteoform: a single term describing protein complexity. Nature Methods. 2013 ;10:186-187.
Welham NV, Chang Z, Smith LM, Frey BL. Proteomic analysis of a decellularized human vocal fold mucosa scaffold using 2D electrophoresis and high-resolution mass spectrometry. Biomaterials. 2013 ;34:669-676.
Miller MJ, Scalf M, Rytz TC, Hubler SL, Smith LM, Vierstra RD. Quantitative Proteomics Reveals Factors Regulating RNA Biology as Dynamic Targets of Stress-induced SUMOylation in Arabidopsis. Molecular & Cellular Proteomics. 2013 ;12:449-463.
2011
Krusemark CJ, Frey BL, Smith LM, Belshaw PJ. Complete Chemical Modification of Amine and Acid Functional Groups of Peptides and Small Proteins Gevaert K, Vandekerckhove J. Methods Mol Biol. 2011 ;753:77-91.
Jarecki JL, Frey BL, Smith LM, Stretton AO. Discovery of Neuropeptides in the Nematode Ascaris suum by Database Mining and Tandem Mass Spectrometry. Journal of Proteome Research. 2011 ;10:3098-3106.
Olson CN, Galloway MM, Yu G, Hedman CJ, Lockett MR, Yoon TP, Stone EA, Smith LM, Keutsch FN. Hydroxycarboxylic Acid-Derived Organosulfates: Synthesis, Stability, and Quantification in Ambient Aerosol. Environmental Science & Technology. 2011 ;45:6468-6474.
Park J, Qin H, Scalf M, Hilger RT, Westphall MS, Smith LM, Blick RH. A Mechanical Nanomembrane Detector for Time-of-Flight Mass Spectrometry. Nano Letters. 2011 ;11:3681-3684.
Russell JD, Hilger RT, Ladror DT, Tervo MA, Scalf M, Shortreed MR, Coon JJ, Smith LM. Parallel Detection of Intrinsic Fluorescence from Peptides and Proteins for Quantification during Mass Spectrometric Analysis. Analytical Chemistry. 2011 ;83:2187-2193.
Pellitteri-Hahn MC, Halligan BD, Scalf M, Smith LM, Hickey WJ. Quantitative proteomic analysis of the chemolithoautotrophic bacterium Nitrosomonas europaea: Comparison of growing- and energy-starved cells. Journal of Proteomics. 2011 ;74:411-419.
Wu CH, Chen SY, Shortreed MR, Kreitinger GM, Yuan Y, Frey BL, Zhang Y, Mirza S, Cirillo LA, Olivier M, et al. Sequence-Specific Capture of Protein-DNA Complexes for Mass Spectrometric Protein Identification. Plos One. 2011 ;6.
Hallows WC, Yu W, Smith BC, Devires MK, Ellinger JJ, Someya S, Shortreed MR, Prolla T, Markley JL, Smith LM, et al. Sirt3 Promotes the Urea Cycle and Fatty Acid Oxidation during Dietary Restriction. Molecular Cell. 2011 ;41:139-149.
Smith LM, Shortreed MR, Olivier M. To understand the whole, you must know the parts: unraveling the roles of protein-DNA interactions in genome regulation. Analyst. 2011 ;136:3060-3065.
2009
Lockett MR, Carlisle JC, Le DV, Smith LM. Acyl Chloride-Modified Amorphous Carbon Substrates for the Attachment of Alcohol-, Thiol-, and Amine-Containing Molecules. Langmuir. 2009 ;25:5120-5126.
Lockett MR, Smith LM. Attaching Molecules to Chlorinated and Brominated Amorphous Carbon Substrates via Grignard Reactions. Langmuir. 2009 ;25:3340-3343.
Chen S, Phillips MF, Cerrina F, Smith LM. Controlling Oligonucleotide Surface Density in Light-Directed DNA Array Fabrication. Langmuir. 2009 ;25:6570-6575.
Lockett MR, Smith LM. Fabrication and Characterization of DNA Arrays Prepared on Carbon-on-Metal Substrates. Analytical Chemistry. 2009 ;81:6429-6437.
Krusemark CJ, Frey BL, Belshaw PJ, Smith LM. Modifying the Charge State Distribution of Proteins in Electrospray Ionization Mass Spectrometry by Chemical Derivatization. Journal of the American Society for Mass Spectrometry. 2009 ;20:1617-1625.
Chen SY, Smith LM. Photopatterned Thiol Surfaces for Biomolecule Immobilization. Langmuir. 2009 ;25:12275-12282.
Mandir JB, Lockett MR, Phillips MF, Allawi HT, Lyamichev VI, Smith LM. Rapid Determination of RNA Accessible Sites by Surface Plasmon Resonance Detection of Hybridization to DNA Arrays. Analytical Chemistry. 2009 ;81:8949-8956.
Jorabchi K, Smith LM. Single Droplet Separations and Surface Partition Coefficient Measurements Using Laser Ablation Mass Spectrometry. Analytical Chemistry. 2009 ;81:9682-9688.
Saracco SA, Hansson M, Scalf M, Walker JM, Smith LM, Vierstra RD. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Plant Journal. 2009 ;59:344-358.
2008
Lockett MR, Shortreed MR, Smith LM. Aldehyde-terminated amorphous carbon substrates for the fabrication of biomolecule arrays. Langmuir. 2008 ;24:9198-9203.
Lockett MR, Weibel SC, Phillips MF, Shortreed MR, Sun B, Corn RM, Hamers RJ, Cerrina F, Smith LM. Carbon-on-metal films for surface plasmon resonance detection of DNA arrays. Journal of the American Chemical Society. 2008 ;130:8611-8613.
Jorabchi K, Westphall MS, Smith LM. Charge assisted laser desorption/ionization mass spectrometry of droplets. Journal of the American Society for Mass Spectrometry. 2008 ;19:833-840.
Smith LM. Is charge reduction in ESI really necessary?. Journal of the American Society for Mass Spectrometry. 2008 ;19:629-631.
Murray JK, Sadowsky JD, Scalf M, Smith LM, Tomita Y, Gellman SH. Exploration of structure - Activity relationships among foldamer ligands for a specific protein binding site via parallel and split-and-mix library synthesis. Journal of Combinatorial Chemistry. 2008 ;10:204-215.
Lee JE, Mirza SP, Didier DN, Scalf M, Olivier M, Greene AS, Smith LM. Identification of Cell Surface Markers to Differentiate Rat Endothelial and Fibroblast Cells Using Lectin Arrays and LC-ESI-MS/MS. Analytical Chemistry. 2008 ;80:8269-8275.
Phillips MF, Lockett MR, Rodesch MJ, Shortreed MR, Cerrina F, Smith LM. In situ oligonucleotide synthesis on carbon materials: stable substrates for microarray fabrication. Nucleic Acids Research. 2008 ;36.
Frey BL, Krusemark CJ, Ledvina AR, Coon JJ, Belshaw PJ, Smith LM. Ion-ion reactions with fixed-charge modified proteins to produce ions in a single, very high charge state. International Journal of Mass Spectrometry. 2008 ;276:136-143.
Westphall MS, Jorabchi K, Smith LM. Mass spectrometry of acoustically levitated droplets. Analytical Chemistry. 2008 ;80:5847-5853.
Zhang X, Scalf M, Westphall MS, Smith LM. Membrane protein separation and analysis by supercritical fluid chromatography-mass spectrometry. Analytical Chemistry. 2008 ;80:2590-2598.

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