All Faculty and Research Staff Publications

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Hodges HL, Brown RA, Crooks JA, Weibel DB, Kiessling LL. Imaging mycobacterial growth and division with a fluorogenic probe. Proceedings of the National Academy of Sciences of the United States of America. 2018 ;115:5271-5276.
Shin YH, Gellman SH. Impact of Backbone Pattern and Residue Substitution on Helicity in alpha/beta/gamma-Peptides. Journal of the American Chemical Society. 2018 ;140:1394-1400.
Wu ZJ, Tiambeng TN, Cai WX, Che BF, Lin ZQ, Gregoric ZR, Ge Y. Impact of Phosphorylation on the Mass Spectrometry Quantification of Intact Phosphoproteins. Analytical Chemistry. 2018 ;90:4935-4939.
Hebert AS, Thoing C, Riley NM, Kwiecien NW, Shiskova E, Huguet R, Cardasis HL, Kuehn A, Eliuk S, Zabrouskov V, et al. Improved Precursor Characterization for Data-Dependent Mass Spectrometry. Analytical Chemistry. 2018 ;90:2333-2340.
Van Vleet MJ, Weng TT, Li XY, Schmidt JR. In Situ, Time-Resolved, and Mechanistic Studies of Metal-Organic Framework Nucleation and Growth. Chemical Reviews. 2018 ;118:3681-3721.
Schneider S, Wolf D, Stolt MJ, Jin S, Pohl D, Rellinghaus B, Schmidt M, Buchner B, Goennenwein STB, Nielsch K, et al. Induction Mapping of the 3D-Modulated Spin Texture of Skyrmions in Thin Helimagnets. Physical Review Letters. 2018 ;120.
Dutta A, Tyminska N, Zhu GH, Collins J, Lively RP, Schmidt JR, Vasenkov S. Influence of Hydrogen Sulfide Exposure on the Transport and Structural Properties of the Metal-Organic Framework ZIF-8. Journal of Physical Chemistry C. 2018 ;122:7278-7287.
Han C, Zhang CY, Tyminska N, Schmidt JR, Sholl DS. Insights into the Stability of Zeolitic Imidazolate Frameworks in Humid Acidic Environments from First-Principles Calculations. Journal of Physical Chemistry C. 2018 ;122:4339-4348.
McGeachy AC, Dalchand N, Caudill ER, Li T, Dogangun M, Olenick LL, Chang H, Pedersen JA, Geiger FM. Interfacial electrostatics of poly( vinylamine hydrochloride), poly( diallyldimethylammonium chloride), poly-L-lysine, and poly-L-arginine interacting with lipid bilayers. Physical Chemistry Chemical Physics. 2018 ;20:10846-10856.
Zhi B, Gallagher MJ, Frank BP, Lyons TY, Qiu TA, Da J, Mensch AC, Hamers RJ, Rosenzweig Z, Fairbrother DH, et al. Investigation of phosphorous doping effects on polymeric carbon dots: Fluorescence, photostability, and environmental impact. Carbon. 2018 ;129:438-449.
Zhu ZP, Wang HY, Simmons C, Tseng PS, Qiu X, Zhang Y, Duan XY, Yang JK, Tang WP. Iridium-Catalyzed Dynamic Kinetic Stereoselective Allylic Etherification of Achmatowicz Rearrangement Products. Advanced Synthesis & Catalysis. 2018 ;360:595-599.
Liu JT, Yang SY, Tang WP, Yang ZH, Xu JX. Iridium-catalyzed efficient reduction of ketones in water with formic acid as a hydride donor at low catalyst loading. Green Chemistry. 2018 ;20:2118-2124.
Voss JM, Kregel SJ, Fischer KC, Garand E. IR-IR Conformation Specific Spectroscopy of Na+(Glucose) Adducts. Journal of the American Society for Mass Spectrometry. 2018 ;29:42-50.
Mitok KA, Freiberger EC, Schueler KL, Rabaglia ME, Stapleton DS, Kwiecien NW, Malec PA, Hebert AS, Broman AT, Kennedy RT, et al. Islet proteomics reveals genetic variation in dopamine production resulting in altered insulin secretion. Journal of Biological Chemistry. 2018 ;293:5860-5877.
Rafiee M, Wang F, Hruszkewycz DP, Stahl SS. &ITN&IT-Hydroxyphthalimide-Mediated Electrochemical Iodination of Methylarenes and Comparison to Electron-Transfer-Initiated C-H Functionalization. Journal of the American Chemical Society. 2018 ;140:22-25.
Ma FF, Sun RX, Tremmel DM, Sacket SD, Odorico J, Li LJ. Large-Scale Differentiation and Site Specific Discrimination of Hydroxyproline Isomers by Electron Transfer/Higher-Energy Collision Dissociation (EThcD) Mass Spectrometry. Analytical Chemistry. 2018 ;90:5857-5864.
Yao M, Chen BM, Zhao WP, Mehl JT, Li LJ, Zhu MS. LC-MS Differential Analysis for Fast and Sensitive Determination of Biotransformation of Therapeutic Proteins. Drug Metabolism and Disposition. 2018 ;46:451-457.
Wang D, Weinstein AB, White PB, Stahl SS. Ligand-Promoted Palladium-Catalyzed Aerobic Oxidation Reactions. Chemical Reviews. 2018 ;118:2636-2679.
Das A, Rahimi A, Ulbrich A, Alherech M, Motagamwala AH, Bhalla A, Sousa LD, Balan V, Dumesic JA, Hegg EL, et al. Lignin Conversion to Low-Molecular-Weight Aromatics via an Aerobic Oxidation-Hydrolysis Sequence: Comparison of Different Lignin Sources. Acs Sustainable Chemistry & Engineering. 2018 ;6:3367-3374.
Hutchins PD, Russell JD, Coon JJ. LipiDex: An Integrated Software Package for High-Confidence Lipid Identification. Cell Systems. 2018 ;6:621-+.
Cesnik AJ, Yang B, Truong A, Etheridge T, Spiniello M, Steinbrink MI, Shortreed MR, Frey BL, Jarrard DF, Smith LM. Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers. Transl Oncol. 2018 ;11:808-814.
Buchberger AR, DeLaney K, Johnson J, Li LJ. Mass Spectrometry Imaging: A Review of Emerging Advancements and Future Insights. Analytical Chemistry. 2018 ;90:240-265.
Wysoczynski-Horita CL, Boursier ME, Hill R, Hansen K, Blackwell HE, Churchill MEA. Mechanism of agonism and antagonism of the Pseudomonas aeruginosa quorum sensing regulator QscR with non-native ligands. Molecular MicrobiologyMolecular Microbiology. 2018 ;108:240-257.
Mannel DS, King J, Preger Y, Ahmed MS, Root TW, Stahl SS. Mechanistic Insights into Aerobic Oxidative Methyl Esterification of Primary Alcohols with Heterogeneous PdBiTe Catalystsy. Acs Catalysis. 2018 ;8:1038-1047.
Hermes ED, Janes AN, Schmidt JR. Mechanistic Insights into Solution-Phase Oxidative Esterification of Primary Alcohols on Pd(111) from First-Principles Microkinetic Modeling. ACS Catalysis. 2018 ;8:272-282.
Yang ZL, Choi H, Weisshaar JC. Melittin-Induced Permeabilization, Re-sealing, and Re-permeabilization of E-coli Membranes. Biophysical Journal. 2018 ;114:368-379.
Vakirlis N, Hebert AS, Opulente DA, Achaz G, Hittinger CT, Fischer G, Coon JJ, Lafontaine I. A Molecular Portrait of De Novo Genes in Yeasts. Molecular Biology and Evolution. 2018 ;35:631-645.
Martin-Garrido A, Biesiadecki BJ, Salhi HE, Shaifta Y, Remedios CG dos, Ayaz-Guner S, Cai WX, Ge Y, Avkiran M, Kentish JC. Monophosphorylation of cardiac troponin-I at Ser-23/24 is sufficient to regulate cardiac myofibrillar Ca2+ sensitivity and calpain-induced proteolysis. Journal of Biological Chemistry. 2018 ;293:8588-8599.
Zhang YZ, DeLaney K, Hui LM, Wang JH, Sturm RM, Li LJ. A Multifaceted Mass Spectrometric Method to Probe Feeding Related Neuropeptide Changes in Callinectes sapidus and Carcinus maenas. Journal of the American Society for Mass Spectrometry. 2018 ;29:948-960.
Lapointe CP, Stefely JA, Jochem A, Hutchins PD, Wilson GM, Kwiecien NW, Coon JJ, Wickens M, Pagliarini DJ. Multi-omics Reveal Specific Targets of the RNA-Binding Protein Puf3p and Its Orchestration of Mitochondrial Biogenesis. Cell Systems. 2018 ;6:125-+.
Overmyer KA, Tyanova S, Hebert AS, Westphall MS, Cox J, Coon JJ. Multiplexed proteome analysis with neutron-encoded stable isotope labeling in cells and mice. Nature Protocols. 2018 ;13:293-306.
Kim SH, Stiles SG, Feichtmeier JM, Ramesh N, Zhan L, Scalf MA, Smith LM, U. Pandey B, Tibbetts RS. Mutation-dependent aggregation and toxicity in a Drosophila model for UBQLN2-associated ALS. Human Molecular Genetics. 2018 ;27:322-337.
Nori-Shargh D, Weinhold F. Natural Bond Orbital Theory of Pseudo-Jahn-Teller Effects. Journal of Physical Chemistry A. 2018 ;122:4490-4498.
Yang N, Anapindi KDB, Rubakhin SS, Wei PL, Yu Q, Li LJ, Kenny PJ, Sweedler JV. Neuropeptidomics of the Rat Habenular Nuclei. Journal of Proteome Research. 2018 ;17:1463-1473.
Van Vleet MJ, Misquitta AJ, Schmidt JR. New Angles on Standard Force Fields: Toward a General Approach for Treating Atomic-Level Anisotropy. Journal of Chemical Theory and Computation. 2018 ;14:739-758.
DeLaney K, Buchberger AR, Atkinson L, Grunder S, Mousley A, Li LJ. New techniques, applications and perspectives in neuropeptide research. Journal of Experimental Biology. 2018 ;221.
Wei LM, Gregorich ZR, Lin ZQ, Cai WX, Jin YT, McKiernan SH, McIlwain S, Aiken JM, Moss RL, Diffee GM, et al. Novel Sarcopenia-related Alterations in Sarcomeric Protein Post-translational Modifications (PTMs) in Skeletal Muscles Identified by Top-down Proteomics. Molecular & Cellular Proteomics. 2018 ;17:148-159.
Kontur WS, Bingman CA, Olmsted CN, Wassarman DR, Ulbrich A, Gall DL, Smith RW, Yusko LM, Fox BG, Noguera DR, et al. Novosphingobium aromaticivorans uses a Nu-class glutathione S-transferase as a glutathione lyase in breaking the beta-aryl ether bond of lignin. Journal of Biological Chemistry. 2018 ;293:4955-4968.
Robinson ME, Ng JD, Zhang HL, Buchman JT, Shenderova OA, Haynes CL, Ma ZQ, Goldsmith RH, Hamers RJ. Optically Detected Magnetic Resonance for Selective Imaging of Diamond Nanoparticles. Analytical Chemistry. 2018 ;90:769-776.
Fredrickson DC. Parallels in Structural Chemistry between the Molecular and Metallic Realms Revealed by Complex Intermetallic Phases. Accounts of Chemical Research. 2018 ;51:248-257.
Su Y, Xu J, Shi Q, Yu L, Cai T. Polymorphism of griseofulvin: concomitant crystallization from the melt and a single crystal structure of a metastable polymorph with anomalously large thermal expansion. Chemical Communications. 2018 ;54:358-361.
Cao QJW, Ouyang CZ, Zhong XF, Li LJ. Profiling of small molecule metabolites and neurotransmitters in crustacean hemolymph and neuronal tissues using reversed-phase LC-MS/MS. Electrophoresis. 2018 ;39:1241-1248.
Leduc RD, Schwammle V, Shortreed MR, Cesnik AJ, Solntsev SK, Shaw JB, Martin MJ, Vizcaino JA, Alpi E, Danis P, et al. ProForma: A Standard Proteoform Notation. Journal of Proteome Research. 2018 ;17:1321-1325.
Cesnik AJ, Shortreed MR, Schaffer LV, Knoener RA, Frey BL, Scalf M, Solntsev SK, Dai YX, Gasch AP, Smith LM. Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families. Journal of Proteome Research. 2018 ;17:568-578.
Smith LM, Kelleher NL. Proteoforms as the next proteomics currency. Science. 2018 ;359:1106-1107.
Esnault S, Hebert AS, Jarjour NN, Coon JJ, Mosher DF. Proteomic and Phosphoproteomic Changes Induced by Prolonged Activation of Human Eosinophils with IL-3. Journal of Proteome Research. 2018 ;17:2102-2111.
Cheng X, Shkel IA, Molzahn C, Lambert D, Karim R, Record MT. Quantifying Interactions of Nucleobase Atoms with Model Compounds for the Peptide Backbone and Glutamine and Asparagine Side Chains in Water. Biochemistry. 2018 ;57:2227-2237.
Stallcop LE, Alvarez-Garcia YR, Reyes-Ramos AM, Ramos-Cruz KP, Morgan MM, Shi YT, Li LJ, Beebe DJ, Domenech M, Warrick JW. Razor-printed sticker microdevices for cell-based applications. Lab on a Chip. 2018 ;18:451-462.
Chen ZW, Glover MS, Li LJ. Recent advances in ion mobility-mass spectrometry for improved structural characterization of glycans and glycoconjugates. Current Opinion in Chemical Biology. 2018 ;42:1-8.
Voss JM, Fischer KC, Garand E. Revealing the structure of isolated peptides: IR-IR predissociation spectroscopy of protonated triglycine isomers. Journal of Molecular Spectroscopy. 2018 ;347:28-34.