James L. Skinner
Publications of the Skinner Group (Theoretical Chemistry Institute)

1. Kinetic energy and path curvature in bound state sytems, E. Switkes, E. L. Russell, and J. L. Skinner, J. Chem. Phys. 67, 3061 (1977).

2. Relaxation processes and chemical kinetics, J. L. Skinner and P. G. Wolynes, J. Chem. Phys. 69, 2143 (1978).

3. Derivation of Smoluchowski equations with corrections for Fokker-Planck and BGK collision models, J. L. Skinner and P. G. Wolynes, Physica 96A, 561 (1979).

4. General kinetic models of activated processes in condensed phases, J. L. Skinner and P. G. Wolynes, J. Chem. Phys. 72, 4913 (1980).

5. Impulsive stochastic models of molecular relaxation and isomerization reactions, B. J. Berne, J. L. Skinner, and P. G. Wolynes, J. Chem. Phys. 73, 4314 (1980).

6. Transition state and Brownian motion theories of solitons, J. L. Skinner and P. G. Wolynes, J. Chem. Phys. 73, 4015 (1980).

7. Solitons, defect diffusion, and dielectric relaxation of polymers, J. L. Skinner and P. G. Wolynes, J. Chem. Phys. 73, 4022 (1980).

8. Theory of photon echoes from a pair of coupled two-level systems: impurity dimers and energy transfer in molecular crystals, J. L. Skinner, H. C. Andersen, and M. D. Fayer, J. Chem. Phys. 75, 3195 (1981).

9. Correlation function analysis of coherent optical transients and fluorescence from a quasi-two-level system, J. L. Skinner, H. C. Andersen, and M. D. Fayer, Phys. Rev. A 24, 1994 (1981).

10. The theory of photon echoes for strongly coupled electron-phonon systems, J. L. Skinner, J. Chem. Phys. 77, 3398 (1981).

11. Effect of potential shape on isomerization rate constants for the BGK model, D. K. Garrity and J. L. Skinner, Chem Phys. Lett. 95, 46 (1983).

12. Kinetic Ising model for polymer dynamics: applications to dielectric relaxation and dynamic depolarized light scattering, J. L. Skinner, J. Chem. Phys. 79, 1955 (1983).

13. The soliton model for dielectric relaxation in crystalline polyethylene. Comparison with experiment, J. L. Skinner and Y. H. Park, Macromolecules 17, 1735 (1984).

14. On the thermal broadening of zero-phonon impurity lines in absorption and fluorescence spectra, D. Hsu and J. L. Skinner, J. Chem. Phys. 81, 1604 (1984).

15. Optical dephasing and photon echoes from energetically and substitutionally disordered crystals, L. Root and J. L. Skinner, J. Chem. Phys. 81, 5310 (1984).

16. Nonperturbative theory of temperature-dependent optical dephasing in crystals. I. Acoustic or optical phonons, D. Hsu and J. L. Skinner, J. Chem. Phys. 81, 5471 (1984).

17. Thermal zero-phonon linewidths of impurities in crystals: theory and experiment, D. Hsu and J. L. Skinner, J. Luminescence 31&32, 750 (1984).

18. Exciton dynamics and transient grating experiments, D. K. Garrity and J. L. Skinner, J. Chem. Phys. 82, 260 (1985).

19. Kinetic Ising model for polymer dynamics. II. Generalized transition rates and the Williams-Watts nonexponential function, J. Budimir and J. L. Skinner, J. Chem. Phys. 82, 5232 (1985).

20. Nonperturbative theory of temperature-dependent optical dephasing in crystals. II. Pseudolocal phonons, D. Hsu and J. L. Skinner, J. Chem. Phys. 83, 2097 (1985).

21. Nonperturbative theory of temperature-dependent optical dephasing in crystals. III. Comparison with experiment, D. Hsu and J. L. Skinner, J. Chem. Phys. 83, 2107 (1985).

22. Frequency-dependent optical dephasing and the nature of inhomogeneous broadening in crystals, L. Root and J. L. Skinner, Phys. Rev. B 32, 4111 (1985).

23. Optical dephasing, energy transfer, and quantum percolation in crystals, L. Root, D. Hsu, and J. L. Skinner, J. Physique 46, C7 (1985).

24. Optical dephasing of ions and molecules in crystals, J. L. Skinner and D. Hsu, Adv. Chem. Phys. 65, 1 (1986).

25. A renormalization group approach to quantum percolation and Anderson localization, L. Root and J. L. Skinner, Phys. Rev. B 33, 7738 (1986).

26. Exciton transport in mixed crystals: quantum percolation, L. Root and J. L. Skinner, Proceedings of the Second International Conference on Unconventional Photoactive Solids, Cleveland, Ohio (1986).

27. Temperature and frequency dependent optical dephasing of impurities in crystals, D. Hsu, L. Root, and J. L. Skinner, Proceedings of the First International Conference on Laser Science, Dallas, Texas, AIP Conference Proceedings Series (1986).

28. Pure dephasing of a two-level system, J. L. Skinner and D. Hsu, Feature Article, J. Phys. Chem. 90, 4931 (1986).

29. Nonperturbative theory of temperature-dependent optical dephasing in crystals. IV. Microscopic model for pseudolocal phonons, D. Hsu and J. L. Skinner, J. Chem. Phys. 87, 54 (1987).

30. General quantum mechanical theory of pure dephasing, D. Hsu and J. L. Skinner, J. Luminescence 37, 331 (1987).

31. Optical and vibrational dephasing in crystals: theory and experiment, J. L. Skinner and D. Hsu, J. Luminescence 38, 134 (1987).

32. On the relation between T1 and T2 for stochastic relaxation models, J. Budimir and J. L. Skinner, J. Stat. Phys. 49, 1029 (1987).

33. Coherent exciton transport in substitutionally disordered crystals, J. L. Skinner, L. J. Root, and J. Bauer, J. Luminescence 40&41, 635 (1988).

34. New approach to localization: quantum connectivity, L. J. Root, J. D. Bauer, and J. L. Skinner, Phys. Rev. B 37, 5518 (1988).

35. Proton transfer in benzoic acid crystals: a chemical spin-Boson problem. Theoretical analysis of NMR, neutron scattering, and optical experiments, J. L. Skinner and H. P. Trommsdorff, J. Chem. Phys. 89, 897 (1988).

36. Localization phase diagram for the energetically and substitutionally disordered Anderson/quantum percolation model, L. J. Root and J. L. Skinner, J. Chem. Phys. 89, 3279 (1988).

37. Localization in topologically disordered systems, J. D. Bauer, V. Logovinsky and J. L. Skinner, J. Phys. C 21, L993 (1988).

38. Theory of pure dephasing in crystals, J. L. Skinner, Ann. Rev. Phys. Chem. 39, 463 (1988).

39. Vibrational dephasing in crystals: theory and experiment, J. L. Skinner and D. Hsu, Chem. Phys. 128, 35 (1988).

40. Renormalization-group approach to the metal-insulator transition in doped semiconductors, J. D. Bauer, V. Logovinsky and J. L. Skinner, J. Chem. Phys. 90, 2703 (1989).

41. Microscopic theory of reversible pressure broadening in hole- burning spectra of impurities in glasses, B. B. Laird and J. L. Skinner, J. Chem. Phys. 90, 3274 (1989).

42. On the microscopic nature of inhomogeneously broadened spectra of chromophores in glasses and crystals, B. B. Laird and J. L. Skinner, J. Chem. Phys. 90, 3880 (1989).

43. T2 can be greater than 2T1, H. Sevian and J. L. Skinner, J. Chem. Phys. 91, 1775 (1989).

44. Inhomogeneous broadening in solids: progress toward a microscopic understanding, J. L. Skinner, B. B. Laird and L. Root, J. Luminescence 45, 6 (1990).

45. Fractal dimension and correlation length exponent for Anderson localization, J. L. Skinner, J. Bauer and T. - M. Chang, J. Luminescence 45, 333 (1990).

46. Energy transfer and instantaneous spectal diffusion processes in Tb3+ compounds as probed in photon echo experiments, G. K. Liu, R. L. Cone, M. F. Joubert, B. Jacquier and J. L. Skinner, J. Luminescence 45, 387 (1990).

47. Correlation length and inverse-participation-ratio exponents and multifractal structure for Anderson localization, J. Bauer, T.-M. Chang and J. L. Skinner, Phys. Rev. B 42, 8121 (1990).

48. Non-Markovian relaxation of a spin-1/2 particle in a fluctuating transverse field: cumulant expansion and stochastic simulation results, M. Aihara, H. M. Sevian and J. L. Skinner, Phys. Rev. A 41, 6596 (1990).

49. Critical exponents for Anderson localization, T. - M. Chang, J. D. Bauer and J. L. Skinner, J. Chem. Phys. 93, 8973 (1990).

50. Stochastic models of population and phase relaxation, J. L. Skinner, H. M. Sevian, M. Aihara and B. B. Laird, in: "Large-scale molecular systems" (NATO ASI Proceedings Vol. B 258), Edited by W. Gans et al. (Plenum, New York, 1991) p. 137.

51. Classical and quantum, lattice and continuum percolation, J. L. Skinner, J. G. Saven, J. R. Wright and L. J. Root, in: "Large-scale molecular systems" (NATO ASI Proceedings Vol. B 258), Edited by W. Gans et al. (Plenum, New York, 1991) p. 143.

52. Localization critical exponents, J. L. Skinner, T. - M. Chang and J. D. Bauer, in: "Large-scale molecular systems" (NATO ASI Proceedings Vol. B 258), Edited by W. Gans et al. (Plenum, New York, 1991) p. 131.

53. Classical and quantum continuum percolation with hard core interactions, J. G. Saven, J. L. Skinner and J. R. Wright, J. Chem. Phys. 94, 6153 (1991).

54. Quantum-mechanical derivation of the Bloch equations: beyond the weak coupling limit, B. B. Laird, J. Budimir and J. L. Skinner, J. Chem. Phys. 94, 4391 (1991).

55. T2 can be greater than 2T1 even at finite temperature, B. B. Laird and J. L. Skinner, J. Chem. Phys. 94, 4405, (1991).

56. Laser spectroscopy of proton dynamics in hydrogen bonds, H. P. Trommsdorff, R. M. Hochstrasser, A. Oppenlander, M. Pierre, Ch. Rambaud, R. Silbey, J. L. Skinner and J.-C. Vial, Proc. SPIE 1403, 221 (1991).

57. Single-molecule probes, J. L. Skinner, Nature 349, 195 (1991).

58. Molecular theory of inhomogeneous broadening in glasses, J. L. Skinner, Opt. Soc. Amer. Technical Digest 16, 278 (1991).

59. A molecular theory of inhomogeneous broadening, including the correlation between different transitions, in liquids and glasses, H. M. Sevian and J. L. Skinner, Theoretica Chimica Acta 82, 29 (1992).

60. Molecular theory of transition energy correlations for pairs of chromophores in liquids or glasses, H. M. Sevian and J. L. Skinner, J. Chem. Phys. 97, 8 (1992).

61. Theory of impurity lineshapes in crystals, glasses, and liquids, J. L. Skinner, Opt. Soc. Amer. Technical Digest 22, 181 (1992).

62. Non-Markovian population and phase relaxation and absorption lineshape for a two-level system strongly coupled to a harmonic quantum bath, T. - M. Chang and J. L. Skinner, Physica A 193, 483 (1993).

63. Optical lineshapes of impurities in crystals: lattice model of inhomogeneous broadening by point defects, D. L. Orth, R. J. Mashl and J. L. Skinner, J. Phys.: Condens. Matter 5, 2533 (1993).

64. A molecular theory of the lineshape: inhomogeneous and homogeneous electronic spectra of dilute chromophores in nonpolar fluids, J. G. Saven and J. L. Skinner, J. Chem. Phys. 99, 4391 (1993).

65. Anderson localization with correlated disorder, M. D. Stephens and J. L. Skinner, Chem. Phys. 177, 727 (1993).

66. Spectral diffusion of single molecule fluorescence: a probe of low- frequency localized excitations in disordered crystals, P. D. Reilly and J. L. Skinner, Phys. Rev. Lett. 71, 4257 (1993).

67. Anderson localization with short-range correlated diagonal disorder, M. D. Stephens and J. L. Skinner, J. Lumin. 60&61, 449 (1994).

68. A model for the spectral diffusion of single molecule optical transitions in solids, P. D. Reilly and J. L. Skinner, J. Lumin. 60&61, 445 (1994).

69. Molecular theory of optical absorption lineshapes of dilute solutes in liquids: a probe of solvent dynamics, J. G. Saven and J. L. Skinner, Proc. Jerusalem Sym. 26, 461 (1994).

70. Models of Anderson localization, J. L. Skinner, Feature Article, J. Phys. Chem. 98, 2503 (1994).

71. On the ratio T2/T1 for non-Ohmic spectral densities, B. B. Laird, T.-M. Chang, and J. L. Skinner, J. Chem. Phys. 101, 852 (1994).

72. Spectroscopy of a chromophore coupled to a lattice of dynamic two-level systems: I. Absorption lineshape, P. D. Reilly and J. L. Skinner, J. Chem. Phys. 101, 959 (1994).

73. Spectroscopy of a chromophore coupled to a lattice of dynamic two-level systems: II. Spectral diffusion kernel, P. D. Reilly and J. L. Skinner, J. Chem. Phys. 101, 965 (1994).

74. Lattice model of inhomogeneous broadening in crystals: correlation of frequency distributions for different transitions, D. L. Orth and J. L. Skinner, J. Phys. Chem. 98, 7342 (1994).

75. Spectral diffusion induced by the spatial motion of point perturbers, J. Kikas and J. L. Skinner, Chem. Phys. Lett. 230, 429 (1994).

76. Spectral diffusion of individual pentacene molecules in p- terphenyl crystal: stochastic theoretical model and analysis of experimental data, P. D. Reilly and J. L. Skinner, J. Chem. Phys. 102, 1540 (1995).

77. On the relaxation of a two-level system driven by a strong electromagnetic field, E. Geva, R. Kosloff, and J. L. Skinner, J. Chem. Phys. 102, 8541 (1995).

78. On the theory of multiphonon relaxation rates in solids, S. A. Egorov and J. L. Skinner, J. Chem. Phys. 103, 1533 (1995).

79. Spectral dynamics of individual molecules in solids, J. L. Skinner, Mol. Cryst. Liq. Cryst. 283, 89 (1996).

80. Structure and dynamics of infinitely dilute solutions, S. A. Egorov, M. D. Stephens, A. Yethiraj, and J. L. Skinner, Mol. Phys. 88, 477 (1996).

81. Structure and dynamics in solids as probed by optical spectroscopy, J. L. Skinner and W. E. Moerner, Centennial Issue Article, J. Phys. Chem. B 100, 13251 (1996).

82. A theory of vibrational energy relaxation in liquids, S. A. Egorov and J. L. Skinner, J. Chem. Phys. 105, 7047 (1996).

83. Spectral diffusion and the energy landscape of a protein, K. Fritsch, J. Friedrich, F. Parak, and J. L. Skinner, Proc. Nat. Acad. Sci. 93, 15141 (1996).

84. Spectral dynamics of individual molecules in glasses and crystals, E. Geva, P. D. Reilly, and J. L. Skinner, Accts. Chem. Res. 29, 579 (1996).

85. An improved theory of multiphonon relaxation in solids, S. A. Egorov and J. L. Skinner, J. Chem. Phys. 105, 10153 (1996).

86. On the distribution of single molecule line widths in low-temperature glasses, E. Geva and J. L. Skinner, Mol. Cryst. Liq. Cryst. 291, 73 (1996).

87. Theoretical models for the spectral dynamics of individual molecules in solids, J. L. Skinner, in "Single-Molecule Optical Detection, Imaging and Spectroscopy," edited by Th. Basche, W. E. Moerner, M. Orrit, and U. Wild (VCH, Weinheim, 1997).

88. Vibrational energy relaxation of diatomic molecules in rare gas crystals, S. A. Egorov and J. L. Skinner, J. Chem. Phys. 106, 1034 (1997).

89. Molecular theory of electronic spectroscopy in nonpolar fluids: Ultrafast solvation dynamics and absorption and emission lineshapes, M. D. Stephens, J. G. Saven, and J. L. Skinner, J. Chem. Phys. 106, 2129 (1997).

90. Theory of photon echoes and hole burning in low temperature glasses: How good are the standard approximations?, E. Geva and J. L. Skinner, J. Chem. Phys. 107, 7630 (1997).

91. Theory of single molecule optical line shape distributions in low temperature glasses, E. Geva and J. L. Skinner, J. Phys. Chem. B 101, 8920 (1997).

92. Semiclassical approximations to golden rule rate constants, J. L. Skinner, J. Chem. Phys. 107, 8717 (1997).

93. Absorption line shapes and solvation dynamics of CH3I in supercritical Ar, S. A. Egorov, M. D. Stephens, and J. L. Skinner, J. Chem. Phys. 107, 10485 (1997).

94. Single-molecule spectroscopy, hole burning, and photon echoes in low-temperature glasses, J. L. Skinner and E. Geva, J. Lumin. 76 & 77, 270 (1998).

95. Argon scattering off the surface of liquid indium: exit angle and energy dependence, L. Tribe, M. Manning, J. A. Morgan, M. D. Stephens, W. R. Ronk, E. Treptow, G. M. Nathanson, and J. L. Skinner, J. Phys. Chem. B 102, 206 (1998).

96. Single molecule spectral trajectories in low-temperature glasses, E. Geva and J. L. Skinner, Chem. Phys. Lett. 287, 125 (1998).

97. Two-state dynamics of single biomolecules in solution, E. Geva and J. L. Skinner, Chem. Phys. Lett. 288, 225 (1998).

98. Vibrational energy relaxation in liquid oxygen, K. F. Everitt, S. A. Egorov and J. L. Skinner, Chem. Phys. 235, 115 (1998).

99. Two-pulse photon echoes from zinc-meso-tetraphenylporphine/polymethylmethacrylate are not consistent with the tunneling two-level system model, E. Geva and J. L. Skinner, J. Chem. Phys. 108, 8485 (1998).

100. Optical line shapes of single molecules in glasses: Temperature and scan-time dependence, E. Geva and J. L. Skinner, J. Chem. Phys. 109, 4920 (1998).

101. Semiclassical approximations to quantum time correlation functions, S. A. Egorov and J. L. Skinner, Chem. Phys. Lett. 293, 469 (1998).

102. Vibrational energy relaxation of oxygen in liquid mixtures with argon, K. F. Everitt and J. L. Skinner, J. Chem. Phys. 110, 4467 (1999).

103. Spectral diffusion in proteins: A simple phenomenological model, J. L. Skinner, J. Friedrich, and J. Schlichter, J. Phys. Chem. A 103, 2310 (1999).

104. Quantum dynamics and vibrational relaxation, S. A. Egorov, K. F. Everitt, and J. L. Skinner, J. Phys. Chem. A 103, 9494 (1999).

105. Local density enhancement in dilute supercritical solutions, S. A. Egorov, A. Yethiraj, and J. L. Skinner, Chem. Phys. Lett. 317, 558 (2000).

106. Vibrational line shifts in supercritical fluids, S. A. Egorov and J. L. Skinner, J. Phys. Chem. A 104, 483 (2000).

107. Vibrational energy relaxation of polyatomic solutes in simple liquids and supercritical fluids, S. A. Egorov and J. L. Skinner, J. Chem. Phys. 112, 275 (2000).

108. Vibrational energy relaxation in liquids and supercritical fluids, J. L. Skinner, S. A. Egorov, and K. F. Everitt, in "Ultrafast Infrared and Raman Spectroscopy", Ed. M. D. Fayer (Marcel Dekker, New York, 2001).

109. Determining the solvation correlation function from three-pulse photon echoes in liquids, K. F. Everitt, E. Geva, and J. L. Skinner, J. Chem. Phys. 114, 1326 (2001).

110. Molecular theory of three-pulse photon echoes for solutes in non-polar fluids, K. F. Everitt and J. L. Skinner, Chem. Phys. 266, 197 (2001).

111. Rotational motion in liquid water is anisotropic: a nuclear magnetic resonance and molecular dynamics simulation study, J. Ropp, C. Lawrence, T. Farrar, and J. L. Skinner, J. Am. Chem. Soc. 123, 8047 (2001).

112. Calculating vibrational energy relaxation rates from classical molecular dynamics simulations: quantum correction factors for processes involving vibration-vibration energy transfer, J. L. Skinner and K. Park, J. Phys. Chem. B 105, 6716 (2001).

113. Single molecules rock and roll near the glass transition, M. D. Ediger and J. L. Skinner, Science 292, 23 (2001).

114. A new intermolecular potential for liquid oxygen, B.-C. Perng, S. Sasaki, B. M. Ladanyi, K. F. Everitt, and J. L. Skinner, Chem. Phys. Lett. 348, 491 (2001).

115. Isotropic Raman line shapes of N2 and O2 along their liquid-gas coexistence lines, K. F. Everitt and J. L. Skinner, J. Chem. Phys. 115, 8531 (2001).

116. Vibrational energy relaxation in liquid oxygen (revisited) and in liquid nitrogen, K. F. Everitt and J. L. Skinner, J. Chem. Phys. 116, 179 (2002).

117. Determining vibrational solvation correlation functions from three-pulse infra-red photon echoes, A. Piryatinski and J. L. Skinner, J. Phys. Chem. B 106, 8055 (2002).

118. Structure-specific DNA cleavage on surfaces, M. Lu, J. G. Hall, M. R. Shortreed, L. Wang, T. Berggren, P. W. Stevens, D. M. Kelso, V. Lyamichev, B. Neri, J. L. Skinner, and L. M. Smith, J. Am. Chem. Soc. 124, 7924 (2002).

119. Vibrational spectroscopy of HOD in liquid D2O. I. Vibrational energy relaxation, C. P. Lawrence and J. L. Skinner, J. Chem. Phys. 117, 5827 (2002).

120. Vibrational spectroscopy of HOD in liquid D2O. II. Infrared line shapes and vibrational Stokes shift, C. P. Lawrence, and J. L. Skinner, J. Chem. Phys. 117, 8847 (2002).

121. Ultrafast infrared spectroscopy probes hydrogen-bonding dynamics in liquid water, C. P. Lawrence and J. L. Skinner, Chem. Phys. Lett. 369, 472 (2003).

122. Vibrational spectroscopy of HOD in liquid D2O. III. Spectral diffusion, and hydrogen-bonding and rotational dynamics, C. P. Lawrence, and J. L. Skinner, J. Chem. Phys. 118, 264 (2003).

123. Vibrational spectroscopy of HOD in liquid D2O. IV. Infrared Two-Pulse Photon Echoes, A. Piryatinski, C. P. Lawrence, and J. L. Skinner, J. Chem. Phys. 118, 9664 (2003).

124. Vibrational spectroscopy of HOD in liquid D2O. V. Infrared three-pulse echoes, A. Piryatinski, C. P. Lawrence, and J. L. Skinner, J. Chem. Phys. 118, 9672 (2003).

125. Flexible TIP4P model for molecular dynamics simulation of liquid water, C. P. Lawrence and J. L. Skinner, Chem. Phys. Lett. 372, 842 (2003).

126. Vibrational spectroscopy of HOD in liquid D2O. VI. Intramolecular and intermolecular energy flow, C. P. Lawrence and J. L. Skinner, J. Chem. Phys. 119, 1623 (2003).

127. Vibrational spectroscopy of HOD in liquid D2O. VII. Temperature and frequency dependence of the OH stretch lifetime, C. P. Lawrence and J. L. Skinner, J. Chem. Phys. 119, 3840 (2003).

128. Hydrodynamic boundary conditions, the Stokes-Einstein law, and long-time tails in the Brownian limit, J. R. Schmidt and J. L. Skinner, J. Chem. Phys. 119, 8062 (2003).

129. Line shapes and photon echoes within a generalized Kubo model, J. R. Schmidt, N. Sundlass, and J. L. Skinner, Chem. Phys. Lett. 378, 559 (2003).

130. Liquid state theories for the structure of water, G. Reddy, C. P. Lawrence, J. L. Skinner, and A. Yethiraj, J. Chem. Phys. 119, 13012 (2003).

131. Water dynamics: dependence on local structure probed with vibrational echo correlation spectroscopy, T. Steinel, J. B. Asbury, S. A. Corcelli, C. P. Lawrence, J. L. Skinner, and M. D. Fayer, Chem. Phys. Lett. 386, 295 (2004).

132. Water dynamics: vibrational echo correlation spectroscopy and comparison to molecular dynamics simulation, J. B. Asbury, T. Steinel, C. Stromberg, S. A. Corcelli, C. P. Lawrence, J. L. Skinner, and M. D. Fayer, J. Phys. Chem. A 108, 1107 (2004).

133. Brownian motion of a rough sphere and the Stokes-Einstein Law, J. R. Schmidt and J. L. Skinner, J. Phys. Chem. B 108, 6767 (2004).

134. Quantum dynamics of simple fluids, C. P. Lawrence and J. L. Skinner, J. Chem. Phys. 120, 6621 (2004).

135. Combined electronic structure/molecular dynamics approach for ultrafast infrared spectroscopy of dilute HOD in liquid D2O and H2O. S. Corcelli, C. P. Lawrence, and J. L. Skinner, J. Chem. Phys. 120, 8107 (2004).

136. On the mode-coupling theory of vibrational line broadening in near-critical fluids, C. P. Lawrence and J. L. Skinner, J. Chem. Phys. 120, 8651 (2004).

137. Density-dependent isotropic Raman line shapes in compressed room-temperature nitrogen, K. F. Everitt, C. P. Lawrence, and J. L. Skinner , J. Phys. Chem. B 108, 10440 (2004).

138. Ultrafast vibrational spectroscopy of water and aqueous N-methylacetamide : Comparison of different eletronic structure/moleculr dynamics approaches , J. R. Schmidt, S. A. Corcelli, and J. L. Skinner, J. Chem. Phys. 121, 8887 (2004).

139. Spectral diffusion in a fluctuating charge model of water, S. A. Corcelli, C. P. Lawrence, J. B. Asbury, T. Steinel, M. D. Fayer, and J. L. Skinner, J. Chem. Phys. 121, 8897 (2004).

140. Dynamics of water probed with vibrational echo correlation spectroscopy, J. B. Asbury, T. Steinel, K. Kwak, S. A. Corcelli, C. P. Lawrence, J. L. Skinner, and M. D. Fayer, J. Chem. Phys. 121,12431 (2004).

141. A mode-coupling theory of vibrational line broadening in near-critical fluids, S. A. Egorov, C. P. Lawrence, and J. L. Skinner. J. Phys. Chem. B 109, 6879 (2005).

142. Quantum corrections in vibrational and electronic condensed phase spectroscopy: Line shapes and echoes, C. P. Lawrence and J. L. Skinner, PNAS 102, 6720 (2005).

143. Infrared and Raman line shapes of dilute HOD in liquid H2O and D2O from 10 to 90 C, S. A. Corcelli and J. L. Skinner, J. Phys. Chem. A 109, 6154 (2005).

144. Pronounced non-Condon effects in the ultrafast vibrational spectroscopy of water, J. R. Schmidt, S. A. Corcelli, and J. L. Skinner, J. Chem. Phys. 123, 044513 (2005).

145. Approaches for the calculation of vibrational frequencies in liquids: Comparison to benchmarks for azide/water clusters, S. Li, J. R. Schmidt, S. A. Corcelli, C. P. Lawrence, and J. L. Skinner, J. Chem. Phys. 124, 204110 (2006).

146. Vibrational spectral diffusion of azide in water, S. Li, J. R. Schmidt, A. Piryatinski, C. P. Lawrence, and J. L. Skinner, J. Phys. Chem. B 110, 18933 (2006).

147. Vibrational energy relaxation of azide in water, S. Li, J. R. Schmidt, and J. L. Skinner, J. Chem. Phys. 125 244507 (2006).

148. Are water simulation models consistent with steady-state and ultrafast vibrational spectroscopy experiments?, J. R. Schmidt, S. T. Roberts, J. J. Loparo, A. Tokmakoff, M. D. Fayer, and J. L. Skinner, Chem. Phys. 341, 143 (2007).

149. Hydrogen bonding definitions and dynamics in liquid water, R. Kumar, J. R. Schmidt and J. L. Skinner, J. Chem. Phys. 126, 204107 (2007).

150. Hydrogen bonding and Raman, IR, and 2DIR spectroscopy of dilute HOD in liquid D2O, B. M. Auer, R. Kumar, J. R. Schmidt and J. L. Skinner, PNAS 104, 14214 (2007).

151. Dynamical effects in line shapes for coupled chromophores: Time-averaging approximation, B. M. Auer and J. L. Skinner, J. Chem. Phys. 127, 104105 (2007).

152. Vibrational energy relaxation of the bend fundamental of dilute water in liquid chloroform and d-chloroform, Y.-S. Lin, S. G. Ramesh, J. M. Shorb, E. L. Sibert III and J. L. Skinner, J. Phys. Chem. B 112, 390 (2008).

153. Infrared and Raman spectra of liquid water: Theory and interpretation, B. M. Auer and J. L. Skinner, J. Chem. Phys. 128, 224511 (2008).

154. Water simulation model with explicit three-molecule interactions, R. Kumar and J. L. Skinner, J. Phys. Chem. B 112, 8311 (2008).

155. Water inertial reorientation: Hydrogen bond strength and the angular potential, D. E. Moilanen, E. E. Fenn, Y.-S. Lin, J. L. Skinner, B. Bagchi, and M. D. Fayer, PNAS 105, 5295 (2008).

156. Vibrational line shapes and spectral diffusion in fluids, J. L. Skinner, Mol. Phys. 106, 2245 (2008).

157. Vibrational sum-frequency spectroscopy of the liquid/vapor interface for dilute HOD in D₂O, B. M. Auer and J. L. Skinner, J. Chem. Phys. 129, 214705 (2008).

158. Vibrational sum-frequency spectroscopy of the water liquid-vapor interface, B. M. Auer and J. L. Skinner, J. Phys. Chem. B (in press).

159. Empirical amide I vibrational frequency map: Application to 2D-IR line shapes for isotope-edited membrane peptide bundles, Y.-S. Lin, J. Shorb, P. Mukherjee, M. T. Zanni, and J. L. Skinner, J. Phys. Chem. B (Centennial Feature Article) 113, 592 (2009).

160. Vibrational line shapes, spectral diffusion and hydrogen bonding in liquid water, J. L. Skinner, B. M. Auer, and Y.-S. Lin, Adv. Chem. Phys. Adv. Chem. Phys. 142 , 59 (2009).

161. Gating mechanism of the influenza A M2 channel revealed by 1 and 2D IR spectroscopies, J. Manor, P. Mukherjee, Y.-S. Lin, H. Leonov, J. L. Skinner, M. T. Zanni, and I. T. Arkin, Structure 17, 247 (2009).

162. Water: Hydrogen bonding and vibrational spectroscopy, in the bulk liquid and at the liquid/vapor interface, B. M. Auer and J. L. Skinner, Chem. Phys. Lett. (Frontiers article) 470, 13 (2009). .

163. Water structure, dynamics, and vibrational spectroscopy in sodium bromide solutions, Y.-S. Lin, B. M. Auer, and J. L. Skinner, J. Chem. Phys. 131, 144511 (2009).

164. Vibrational spectroscopy and dynamics of water confined inside reverse micelles, P. A. Pieniazek, Y.-S. Lin, J. Chowdhary, B. M. Ladanyi, and J. L. Skinner, J. Phys. Chem. 113, 15017 (2009).

165. Signatures of coherent vibrational energy transfer in IR and Raman line shapes for liquid water, M. Yang and J. L. Skinner, Phys. Chem. Chem. Phys. 12, 982 (2010).

166. Solution structures of rat amylin peptide: Simulation, theory, and experiment, A. S. Reddy, L. Wang, Y.-S. Lin, Y. L. Ling, M. Chopra, M. T. Zanni, J. L. Skinner, J. J. de Pablo, Biophysical J. 98, 443 (2010).

167. Vibrational spectroscopy as a probe of structure and dynamics in liquid water, H. J. Bakker and J. L. Skinner, Chem. Rev. 110,1498.

168. 2D IR Line Shapes Probe Ovispirin Peptide Conformation and Depth in Lipid Bilayers, Ann Marie Woys,† Yu-Shan Lin,† Allam S. Reddy,‡ Wei Xiong,† Juan J. de Pablo,‡ James L. Skinner,† and Martin T. Zanni*,† J. Am. Chem. Soc. 132, 2832 (2010).

169. On the calculation of rotational anisotropy decay, as measured by ultrafast polarization-resolved vibrational pump-probe experiments, Y.-S. Lin, P. A. Pieniazek, M. Yang, and J. L. Skinner, J. Chem. Phys. 132 , 174505 (2010).

170. IR and Raman line shapes for ice Ih. I. Dilute HOD in H2O and D2O, F. Li and J. L. Skinner, J. Chem. Phys. 132, 204505 (2010).

171. Stable and metastable states of human amylin in solution, A. S. Reddy, L. Wang, S. Singh, Y. Ling, L. Buchanan, M. T. Zanni, J. L. Skinner, and J. J. de Pablo, Biophysical Journal 99, 2208 (2010).

172. Two-dimensional infrared spectroscopy and ultrafast anisotropy decay of water, T. l. C. Jansen, B. M. Auer, M. Yang, and J. L. Skinner, J. Chem. Phys. 132, 224503 (2010).

173. IR and Raman line shapes for ice Ih. II. H₂O and D₂O, F. Li and J. L. Skinner, Journal of Chemical Physics 133, 244504 (2010). Erratum: Journal of Chemical Physics 134, 099901 (2011).

174. Following the motions of water molecules in aqueous solutions, J.L. Skinner, Science 328, 985 (2010).

175. Vibrational energy relaxation of small molecules and ions in liquids, J. L. Skinner, Theor. Chem. Accounts 128, 147 (2011).

176. Development and Validation of Transferable Amide I Vibrational Frequency Maps for Peptides, L. Wang, C.T. Middleton, M.T. Zanni, and J.L. Skinner, Journal of Physical Chemistry B 115, 3713 (2011).

177. Robust three-body water simulation model, C.J. Tainter, P.A. Pieniazek, Y.-S. Lin, and J.L. Skinner, Journal of Chemical Physics 134, 184501 (2011).

178. Hydrogen bonding at the water surface revealed by isotopic dilution spectroscopy, Igor V. Stiopkin, Champika Weeraman, Piotr A. Pieniazek, Fadel Y. Shalhout, James L. Skinner, and Alexander V. Benderskii, Nature 474, 192 (2011).

179. Collective Hydrogen Bond Reorganization in Water Studied with Temperature-Dependent Ultrafast Infrared Spectroscopy, Rebecca A. Nicodemus, S.A. Corcelli, J.L. Skinner, and Andrei Tokmakoff, Journal of Physical Chemistry B 115, 5604 (2011).

180. Surface of liquid water: Three-body interactions and vibrational sum-frequency spectroscopy, P.A. Pieniazek, C.J. Tainter, and J.L. Skinner, J. American Chemical Society (Communication) 133, 10360 (2011).

181. Interpretation of the water surface vibrational sum-frequency spectrum, P.A. Pieniazek, C.J. Tainter, and J.L. Skinner, J. Chemical Physics 135, 044701 (2011).

182. 2DIR spectroscopy of human amylin fibrils reflects robust β-sheet structure, L. Wang, C.T. Middleton, S. Singh, A.M. Woys, D. Skoff, D.P. Raleigh, J.J. de Pablo, M.T. Zanni, and J.L. Skinner, J. American Chemical Society 133, 16062 (2011).