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Dunkelberger EB, Buchanan LE, Marek P, Cao P, Raleigh DP, Zanni MT. Deamidation Accelerates Amyloid Formation and Alters Amylin Fiber Structure. Journal of the American Chemical Society. 2012;134:12658-12667. |
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Manor J, Feldblum ES, Zanni MT, Arkin IT. Environment Polarity in Proteins Mapped Noninvasively by FTIR Spectroscopy. Journal of Physical Chemistry Letters. 2012;3:939-944. |
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Middleton CT, Marek P, Cao P, Chiu CC, Singh S, Woys AM, et al. Two-dimensional infrared spectroscopy reveals the complex behaviour of an amyloid fibril inhibitor. Nature Chemistry. 2012;4:355-360. |
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Moran SD, Woys AM, Buchanan LE, Bixby E, Decatur SM, Zanni MT. Two-dimensional IR spectroscopy and segmental C-13 labeling reveals the domain structure of human gamma D-crystallin amyloid fibrils. Proceedings of the National Academy of Sciences of the United States of America. 2012;109:3329-3334. |
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Woys AM, Almeida AM, Wang L, Chiu CC, McGovern M, de Pablo JJ, et al. Parallel beta-Sheet Vibrational Couplings Revealed by 2D IR Spectroscopy of an Isotopically Labeled Macrocycle: Quantitative Benchmark for the Interpretation of Amyloid and Protein Infrared Spectra. Journal of the American Chemical Society. 2012;134:19118-19128. |
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Grechko M, Zanni MT. Quantification of transition dipole strengths using 1D and 2D spectroscopy for the identification of molecular structures via exciton delocalization: Application to alpha-helices. The Journal of Chemical Physics [Internet]. 2012;137:184202. Available from: http://link.aip.org/link/?JCP/137/184202/1 |
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Skoff DR, Laaser JE, Mukherjee SS, Middleton CT, Zanni MT. Simplified and economical 2D IR spectrometer design using a dual acousto-optic modulator. Chemical Physics [Internet]. 2012;:-. Available from: http://www.sciencedirect.com/science/article/pii/S0301010412003151 |
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Moran SD, Decatur SM, Zanni MT. Structural and Sequence Analysis of the Human γD-Crystallin Amyloid Fibril Core Using 2D IR Spectroscopy, Segmental (13)C Labeling, and Mass Spectrometry. J Am Chem Soc. 2012;134(44):18410-6. |
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Woys AM, Almeida AM, Wang L, Chiu C-C, McGovern M, De Pablo JJ, et al. Parallel β-Sheet Vibrational Couplings Revealed by 2D IR Spectroscopy of an Isotopically Labeled Macrocycle: Quantitative Benchmark for the Interpretation of Amyloid and Protein Infrared Spectra. J Am Chem Soc. 2012;134(46):19118-28. |
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Laaser JE, Zanni MT. Extracting Structural Information from the Polarization Dependence of One- and Two-Dimensional Sum Frequency Generation Spectra. J Phys Chem A. 2012; |
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Laaser JE, Xiong W, Zanni MT. Time-Domain SFG Spectroscopy Using Mid-IR Pulse Shaping: Practical and Intrinsic Advantages. Journal of Physical Chemistry B. 2011;115:2536-2546. |
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Middleton CT, Buchanan LE, Dunkelberger EB, Zanni MT. Utilizing Lifetimes to Suppress Random Coil Features in 2D IR Spectra of Peptides. Journal of Physical Chemistry Letters. 2011;2:2357-2361. |
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Wang L, Middleton CT, Singh S, Reddy AS, Woys AM, Strasfeld DB, et al. 2DIR Spectroscopy of Human Amylin Fibrils Reflects Stable beta-Sheet Structure. Journal of the American Chemical Society. 2011;133:16062-16071. |
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Wang L, Middleton CT, Zanni MT, Skinner JL. Development and Validation of Transferable Amide I Vibrational Frequency Maps for Peptides. Journal of Physical Chemistry B. 2011;115:3713-3724. |
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Xiong W, Laaser JE, Mehlenbacher RD, Zanni MT. Adding a dimension to the infrared spectra of interfaces using heterodyne detected 2D sum-frequency generation (HD 2D SFG) spectroscopy. Proceedings of the National Academy of Sciences [Internet]. 2011;108:20902-20907. Available from: http://www.pnas.org/content/108/52/20902.abstract |
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Paoprasert P, Laaser JE, Xiong W, Franking RA, Hamers RJ, Zanni MT, et al. Bridge-Dependent Interfacial Electron Transfer from Rhenium-Bipyridine Complexes to TiO2 Nanocrystalline Thin Films. Journal of Physical Chemistry C. 2010;114:9898-9907. |
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Reddy AS, Wang L, Lin Y-S, Ling Y, Chopra M, Zanni MT, et al. Solution Structures of Rat Amylin Peptide: Simulation, Theory, and Experiment. Biophysical Journal. 2010;98:443-451. |
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Reddy AS, Wang L, Singh S, Ling YL, Buchanan L, Zanni MT, et al. Stable and Metastable States of Human Amylin in Solution. Biophysical Journal. 2010;99:2208-2216. |
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Woys AM, Lin Y-S, Reddy AS, Xiong W, De Pablo JJ, Skinner JL, et al. 2D IR Line Shapes Probe Ovispirin Peptide Conformation and Depth in Lipid Bilayers. Journal of the American Chemical Society. 2010;132:2832-2838. |
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Marek P, Mukherjee S, Zanni MT, Raleigh DP. Residue-Specific, Real-Time Characterization of Lag-Phase Species and Fibril Growth During Amyloid Formation: A Combined Fluorescence and IR Study of p-Cyanophenylalanine Analogs of Islet Amyloid Polypeptide. Journal of Molecular Biology. 2010;400:878-888. |
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Marek P, Woys AM, Sutton K, Zanni MT, Raleigh DP. Efficient Microwave-Assisted Synthesis of Human Islet Amyloid Polypeptide Designed to Facilitate the Specific Incorporation of Labeled Amino Acids. Organic Letters. 2010;12:4848-4851. |
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Meng F, Abedini A, Plesner A, Middleton CT, Potter KJ, Zanni MT, et al. The Sulfated Triphenyl Methane Derivative Acid Fuchsin Is a Potent Inhibitor of Amyloid Formation by Human Islet Amyloid Polypeptide and Protects against the Toxic Effects of Amyloid Formation. Journal of Molecular Biology. 2010;400:555-566. |
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Middleton CT, Woys AM, Mukherjee SS, Zanni MT. Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy. Methods. 2010;52:12-22. |
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Xiong W, Laaser JE, Paoprasert P, Franking RA, Hamers RJ, Gopalan P, et al. Transient 2D IR Spectroscopy of Charge Injection in Dye-Sensitized Nanocrystalline Thin Films. Journal of the American Chemical Society. 2009;131:18040-+. |
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Lin YS, Shorb JM, Mukherjee P, Zanni MT, Skinner JL. Empirical Amide I Vibrational Frequency Map: Application to 2D-IR Line Shapes for Isotope-Edited Membrane Peptide Bundles. Journal of Physical Chemistry B. 2009;113:592-602. |
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Manor J, Mukherjee P, Lin YS, Leonov H, Skinner JL, Zanni MT, et al. Gating Mechanism of the Influenza A M2 Channel Revealed by 1D and 2D IR Spectroscopies. Structure. 2009;:247-254. |
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Ling YL, Strasfeld DB, Shim SH, Raleigh DP, Zanni MT. Two-dimensional Infrared Spectroscopy Provides Evidence of an Intermediate in the Membrane-catalyzed Assembly of Diabetic Amyloid. Journal of Physical Chemistry B. 2009;:2498-2505. |
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Middleton CT, Strasfeld DB, Zanni MT. Polarization shaping in the mid-IR and polarization-based balanced heterodyne detection with application to 2D IR spectroscopy. Optics Express. 2009;17:14526-14533. |
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Shim SH, Gupta R, Ling YL, Strasfeld DB, Raleigh DP, Zanni MT. Two-dimensional IR spectroscopy and isotope labeling defines the pathway of amyloid formation with residue-specific resolution. Proceedings of the National Academy of Sciences of the United States of America. 2009;106:6614-6619. |
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Shim SH, Zanni MT. How to turn your pump-probe instrument into a multidimensional spectrometer: 2D IR and Vis spectroscopies via pulse shaping. Physical Chemistry Chemical Physics. 2009;11:748-761. |
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Strasfeld DB, Middleton CT, Zanni MT. Mode selectivity with polarization shaping in the mid-IR. New Journal of Physics. 2009;11. |
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Strasfeld DB, Shim SH, Zanni MT. New Advances in Mid-Ir Pulse Shaping and Its Application to 2d Ir Spectroscopy and Ground-State Coherent Control. Advances in Chemical Physics, Vol 141. 2009;141:1-28. |
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Xiong W, Strasfeld DB, Shim SH, Zanni MT. Automated 2D IR spectrometer mitigates the influence of high optical densities. Vibrational Spectroscopy. 2009;50:136-142. |
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Strasfeld DB, Ling YL, Gupta R, Raleigh DP, Zanni MT. Strategies for Extracting Structural Information from 2D IR Spectroscopy of Amyloid: Application to Islet Amyloid Polypeptide. The Journal of Physical Chemistry B [Internet]. 2009;113:15679-15691. Available from: http://pubs.acs.org/doi/abs/10.1021/jp9072203 |
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Xiong W, Zanni MT. Signal enhancement and background cancellation in collinear two-dimensional spectroscopies. Optics Letters. 2008;33:1371-1373. |
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Strasfeld DB, Ling YL, Shim S-H, Zanni MT. Tracking Fiber Formation in Human Islet Amyloid Polypeptide with Automated 2D-IR Spectroscopy. Journal of the American Chemical Society [Internet]. 2008;130:6698-6699. Available from: http://pubs.acs.org/doi/abs/10.1021/ja801483n |
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Krummel AT, Zanni MT. Evidence for Coupling between Nitrile Groups Using DNA Templates: A Promising New Method for Monitoring Structures with Infrared Spectroscopy. The Journal of Physical Chemistry B [Internet]. 2008;112:1336-1338. Available from: http://pubs.acs.org/doi/abs/10.1021/jp711558a |
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Grumstrup EM, Shim S-H, Montgomery MA, Damrauer NH, Zanni MT. Facile collection of two-dimensional electronic spectra using femtosecond pulse-shaping technology. Optics Express. 2007;15:16681-16689. |
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Shim S-H, Strasfeld DB, Ling YL, Zanni MT. Automated 2D IR spectroscopy using a mid-IR pulse shaper and application of this technology to the human islet amyloid polypeptide. Proceedings of the National Academy of Sciences of the United States of America. 2007;104:14197-14202. |
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Strasfeld DB, Shim S-H, Zanni MT. Controlling vibrational excitation with shaped mid-IR pulses. Physical Review Letters. 2007;99. |
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Ding F, Zanni MT. Heterodyned 3D IR spectroscopy. Chemical Physics [Internet]. 2007;341:95 - 105. Available from: http://www.sciencedirect.com/science/article/pii/S030101040700211X |
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Ding F, Mukherjee P, Zanni MT. Passively correcting phase drift in two-dimensional infrared spectroscopy. Optics Letters. 2006;31:2918. |
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Krummel AT, Zanni MT. DNA vibrational coupling revealed with two-dimensional infrared spectroscopy: Insight into why vibrational spectroscopy is sensitive to DNA structure. Journal of Physical Chemistry B. 2006;110:13991. |
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Mukherjee P, Kass I, Arkin I, Zanni MT. Picosecond dynamics of a membrane protein revealed by 2D IR. Proceedings of the National Academy of Sciences of the United States of America. 2006;103:3528-3533. |
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Shim SH, Strasfeld DB, Fulmer EC, Zanni MT. Femtosecond pulse shaping directly in the mid-IR using acousto-optic modulation. Optics Letters. 2006;31:838-840. |
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Shim S-H, Strasfeld DB, Zanni MT. Generation and characterization of phase and amplitude shaped femtosecond mid-IR pulses. Optics Express. 2006;14:13120-13130. |
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Krummel AT, Zanni MT. Interpreting DNA Vibrational Circular Dichroism Spectra Using a Coupling Model from Two-Dimensional Infrared Spectroscopy. The Journal of Physical Chemistry B [Internet]. 2006;110:24720-24727. Available from: http://pubs.acs.org/doi/abs/10.1021/jp063227a |
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Mukherjee P, Kass I, Arkin IT, Zanni MT. Structural Disorder of the CD3ζ Transmembrane Domain Studied with 2D IR Spectroscopy and Molecular Dynamics Simulations. The Journal of Physical Chemistry B [Internet]. 2006;110:24740-24749. Available from: http://pubs.acs.org/doi/abs/10.1021/jp0640530 |
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Ding F, Fulmer EC, Zanni MT. Heterodyned fifth-order two-dimensional IR spectroscopy: Third-quantum states and polarization selectivity - art. no. 094502. Journal of Chemical Physics. 2005;123:94502. |
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Fulmer EC, Ding F, Mukherjee P, Zanni MT. Vibrational dynamics of ions in glass from fifth-order two-dimensional infrared spectroscopy - art. no. 067402. Physical Review Letters. 2005;9406:7402. |
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Fulmer EC, Ding F, Zanni MT. Heterodyned fifth-order 2D-IR spectroscopy of the azide ion in an ionic glass - art. no. 034302. Journal of Chemical Physics. 2005;122:34302. |
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Fulmer EC, Mukherjee P, Krummel AT, Zanni MT. A pulse sequence for directly measuring the anharmonicities of coupled vibrations: Two-quantum two-dimensional infrared spectroscopy. Journal of Chemical Physics. 2004;120:8067-8078. |
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Mukherjee P, Krummel AT, Fulmer EC, Kass I, Arkin IT, Zanni MT. Site-specific vibrational dynamics of the CD3 zeta membrane peptide using heterodyned two-dimensional infrared photon echo spectroscopy. Journal of Chemical Physics. 2004;120:10215-10224. |
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Ge NH, Zanni MT, Hochstrasser RM. Effects of vibrational frequency correlations on two-dimensional infrared spectra. Journal of Physical Chemistry. 2003;107:9165-9169. |
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Davis AV, Zanni MT, Weinkauf R, Neumark DM. Comment on 'Iodine effect on the relaxation pathway of photoexcited I- (H2O)(n) clusters'. Chemical Physics Letters. 2002;353:455-458. |
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Zanni MT, Asplund MC, Hochstrasser RM. Two-dimensional heterodyned and stimulated infrared photon echoes of N-methylacetamide-D. Journal of Chemical Physics. 2001;114:4579-4590. |
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Zanni MT, Ge NH, Kim YS, Hochstrasser RM. Two-dimensional IR spectroscopy can be designed to eliminate the diagonal peaks and expose only the crosspeaks needed for structure determination. Proceedings of the National Academy of Sciences of the United States of America. 2001;98:11265-11270. |
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Zanni MT, Hochstrasser RM. Two-dimensional infrared spectroscopy: a promising new method for the time resolution of structures. Current Opinion in Structural Biology. 2001;11:516-522. |
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Zanni MT, Stenger J, Asplund MC, Hochstrasser RM. Solvent dependent conformational dynamics of dipeptides studied with two-dimensional infrared spectroscopy. Biophysical Journal. 2001;80:8A-9A. |
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Zanni MT, Stenger J, Decatur SM, Hochstrasser RM. Studying the landscape of an alpha-helix using two-dimensional infrared spectroscopy. Biophysical Journal. 2001;80:9A-9A. |
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Asplund MC, Zanni MT, Hochstrasser RM. Two-dimensional infrared spectroscopy of peptides by phase-controlled femtosecond vibrational photon echoes. Proceedings of the National Academy of Sciences of the United States of America. 2000;97:8219-8224. |
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Davis AV, Zanni MT, Frischkorn C, Elhanine M, Neumark DM. Femtosecond stimulated emission pumping: Dynamics of vibrational energy loss in excited I-2(-)(CO2)(4) clusters. Journal of Electron Spectroscopy and related Phenomena. 2000;112:221-230. |
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Frischkorn C, Zanni MT, Davis AV, Neumark DM. Electron solvation dynamics in I-(NH3)(n) clusters. Faraday Discussions. 2000;115:49-62. |
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Greenblatt BJ, Zanni MT, Neumark DM. Femtosecond photoelectron spectroscopy of I-2(-)(CO2)(n) clusters (n=4, 6, 9, 12, 14, 16). Journal of Chemical Physics. 2000;112:601-612. |
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Zanni MT, Davis AV, Frischkorn C, Elhanine M, Neumark DM. Femtosecond stimulated emission pumping: Characterization of the I-2(-) ground state" (vol 112, pg 8847, 2000). Journal of Chemical Physics. 2000;113:8854-8854. |
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Zanni MT, Davis AV, Frischkorn C, Elhanine M, Neumark DM. Femtosecond stimulated emission pumping: Characterization of the I-2(-) ground state. Journal of Chemical Physics. 2000;112:8847-8854. |
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Zanni MT, Frischkorn C, Davis AV, Neumark DM. Dynamics of the charge-transfer-to-solvent states in I-(Xe)n clusters. Journal of Physical Chemistry A. 2000;104:2527-2530. |
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Batista VS, Zanni MT, Greenblatt BJ, Neumark DM, Miller WH. Femtosecond photoelectron spectroscopy of the I-2(-) anion: A semiclassical molecular dynamics simulation method. Journal of Chemical Physics. 1999;110:3736-3747. |
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Greenblatt BJ, Zanni MT, Neumark DM. Femtosecond photoelectron spectroscopy of I-2(-)(Ar)(n) clusters (n=6,9,12,16,20). Journal of Chemical Physics. 1999;111:10566-10577. |
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Lehr L, Zanni MT, Frischkorn C, Weinkauf R, Neumark DM. Electron solvation in finite systems: Femtosecond dynamics of iodide center dot(water)(n) anion clusters. Science. 1999;284:635-638. |
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Taylor TR, Asmis KR, Zanni MT, Neumark DM. Characterization of the I-3 radical by anion photoelectron spectroscopy. Journal of Chemical Physics. 1999;110:7607-7609. |
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Zanni MT, Batista VS, Greenblatt BJ, Miller WH, Neumark DM. Femtosecond photoelectron spectroscopy of the I-2(-) anion: Characterization of the (A)over-tilde ' (2)Pi(g,1/2) excited state. Journal of Chemical Physics. 1999;110:3748-3755. |
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Zanni MT, Greenblatt BJ, Davis AV, Neumark DM. Photodissociation of gas phase I-3(-) using femtosecond photoelectron spectroscopy. Journal of Chemical Physics. 1999;111:2991-3003. |
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Zanni MT, Greenblatt BJ, Neumark DM. Solvent effects on the vibrational frequency of I-2(-) in size-selected I-2(-)(Ar)(n) and I-2(-)(CO2)(n) clusters. Journal of Chemical Physics. 1998;109:9648-9651. |
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Greenblatt BJ, Zanni MT, Neumark DM. Photodissociation of I-2(-)(Ar)(n) clusters studied with anion femtosecond photoelectron spectroscopy. Science. 1997;276:1675-1678. |
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Zanni MT, Taylor TR, Greenblatt BJ, Soep B, Neumark DM. Characterization of the I-2(-) anion ground state using conventional and femtosecond photoelectron spectroscopy. Journal of Chemical Physics. 1997;107:7613-7619. |
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Greenblatt BJ, Zanni MT, Neumark DM. Photodissociation dynamics of the I-2(-) anion using femtosecond photoelectron spectroscopy. Chemical Physics Letters. 1996;258:523-529. |
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Carpenter MA, Zanni MT, Farrar JM. PRODUCT-STATE-RESOLVED STUDY OF THE O-+D-2 REACTION - ANOMALOUS VIBRATIONAL-STATE DISTRIBUTIONS AT LOW COLLISION ENERGIES. Journal of Physical Chemistry. 1995;99:1380-1383. |
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Freeman CG, Herrick DM, Bryan DC, Kurz KL, Mathews DH, Perera PAA, et al. NEW FOCAL-PLANE DETECTOR SYSTEM FOR THE ROCHESTER RECOIL MASS-SPECTROMETER. Nuclear Instruments & Methods in Physics Research Section a-Accelerators Spectrometers Detectors and Associated Equipment. 1995;357:450-457. |
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Herrick DM, Wolfs FLH, Bryan DC, Freeman CG, Kurz KL, Mathews DH, et al. ELASTIC-SCATTERING AND QUASI-ELASTIC TRANSFER FOR S-32+MO-96,MO-100 AT E(LAB)=180 MEV. Physical Review C. 1995;52:744-754. |
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Carpenter MA, Zanni MT, Levandier DJ, Varley DF, Farrar JM. PROTON-TRANSFER DYNAMICS ON HIGHLY ATTRACTIVE POTENTIAL-ENERGY SURFACES - INDUCED REPULSIVE ENERGY-RELEASE IN O-+HF AT HIGH COLLISION ENERGIES. Canadian Journal of Chemistry-Revue Canadienne De Chimie. 1994;72:828-835. |
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Wolfs FLH, White CA, Bryan DC, Freeman CG, Herrick DM, Kurz KL, et al. BREAKUP OF 87 MEV B-11. Physical Review C. 1994;49:2538-2548. |
