All Faculty and Research Staff Publications

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Aytar BS, Prausnitz MR, Lynn DM. Rapid Release of Plasmid DNA from Surfaces Coated with Polyelectrolyte Multilayers Promoted by the Application of Electrochemical Potentials. ACS Applied Materials & Interfaces. 2012 ;4:2726-2734.
Aytar BS, Muller JPE, Kondo Y, Abbott NL, Lynn DM. Spatial Control of Cell Transfection Using Soluble or Solid-Phase Redox Agents and a Redox-Active Ferrocenyl Lipid. ACS Applied Materials & Interfaces. 2013 ;5:8283-8288.
Aytar BS, Muller JPE, Golan S, Hata S, Takahashi H, Kondo Y, Talmon Y, Abbott NL, Lynn DM. Addition of ascorbic acid to the extracellular environment activates lipoplexes of a ferrocenyl lipid and promotes cell transfection. Journal of Controlled Release. 2012 ;157:249-259.
Aytar BS, Muller JPE, Kondo Y, Talmon Y, Abbott NL, Lynn DM. Redox-Based Control of the Transformation and Activation of siRNA Complexes in Extracellular Environments Using Ferrocenyl Lipids. Journal of the American Chemical Society. 2013 ;135:9111-9120.
Aytar BS, Muller JPE, Golan S, Kondo Y, Talmon Y, Abbott NL, Lynn DM. Chemical oxidation of a redox-active, ferrocene-containing cationic lipid: Influence on interactions with DNA and characterization in the context of cell transfection. Journal of Colloid and Interface Science. 2012 ;387:56-64.
Ayaz-Guner S, Zhang J, Li L, Walker JW, Ge Y. In Vivo Phosphorylation Site Mapping in Mouse Cardiac Troponin I by High Resolution Top-Down Electron Capture Dissociation Mass Spectrometry: Ser22/23 Are the Only Sites Basally Phosphorylated. Biochemistry. 2009 ;48:8161-8170.
Ayala YM, Vindigni A, Nayal M, Spolar RS, Record MT, Dicera E. Thermodynamic Investigation of Hirudin Binding to the Slow and Fast Forms of Thrombin - Evidence for Folding Transitions in the Inhibitor and Protease Coupled to Binding. Journal of Molecular Biology. 1995 ;253:787-798.
Avouris P, Bozso F, Hamers RJ. THE REACTION OF SI(100) 2X1 WITH NO AND NH3 - THE ROLE OF SURFACE DANGLING BONDS. Journal of Vacuum Science & Technology B. 1987 ;5:1387-1392.
Austin S, Kontur WS, Ulbrich A, Oshlag JZ, Zhang WP, Higbee A, Zhang YP, Coon JJ, Hodge DB, Donohue TJ, et al. Metabolism of Multiple Aromatic Compounds in Corn Stover Hydrolysate by Rhodopseudomonas palustris. Environmental Science & Technology. 2015 ;49:8914-8922.
Austad BC, Hart AC, Burke SD. Halichondrin B: synthesis of the C(37)-C(54) subunit. Tetrahedron. 2002 ;58:2011-2026.
Ault AP, Guasco TL, Ryder OS, Baltrusaitis J, Cuadra-Rodriguez LA, Collins DB, Ruppel MJ, Bertram TH, Prather KA, Grassian VH. Inside versus Outside: Ion Redistribution in Nitric Acid Reacted Sea Spray Aerosol Particles as Determined by Single Particle Analysis. Journal of the American Chemical Society. 2013 ;135:14528-14531.
Ault AP, Moffet RC, Baltrusaitis J, Collins DB, Ruppel MJ, Cuadra-Rodriguez LA, Zhao DF, Guasco TL, Ebben CJ, Geiger FM, et al. Size-Dependent Changes in Sea Spray Aerosol Composition and Properties with Different Seawater Conditions. Environmental Science & Technology. 2013 ;47:5603-5612.
Auldridge ME, Forest KT. Bacterial phytochromes: More than meets the light. Critical Reviews in Biochemistry and Molecular Biology. 2011 ;46:67-88.
Auldridge ME, Satyshur KA, Anstrom DM, Forest KT. Structure-guided Engineering Enhances a Phytochrome-based Infrared Fluorescent Protein. Journal of Biological Chemistry. 2012 ;287:7000-7009.
Aukema KG, Kron EM, Herdendorf TJ, Forest KT. Functional dissection of a conserved motif within the pilus retraction protein PilT. Journal of Bacteriology. 2005 ;187:611-618.
Augustyniak E, Chew KH, Shohet JL, Woods RC. Atomic absorption spectroscopic measurements of silicon atom concentrations in electron cyclotron resonance silicon oxide deposition plasmas. Journal of Applied Physics. 1999 ;85:87-93.
Auer BM, Skinner JL. Water: Hydrogen bonding and vibrational spectroscopy, in the bulk liquid and at the liquid/vapor interface. Chemical Physics Letters. 2009 :13-20.
Auer BM, Skinner JL. Vibrational Sum-Frequency Spectroscopy of the Water Liquid/Vapor Interface. Journal of Physical Chemistry B. 2009 ;113:4125-4130.
Auer GK, Lee TK, Rajendram M, Cesar S, Miguel A, Huang KC, Weibel DB. Mechanical Genomics Identifies Diverse Modulators of Bacterial Cell Stiffness. Cell Systems. 2016 ;2:402-411.
Auer B, Kumar R, Schmidt JR, Skinner JL. Hydrogen bonding and Raman, IR, and 2D-IR spectroscopy of dilute HOD in liquid D2O. Proceedings of the National Academy of Sciences of the United States of America. 2007 ;104:14215-14220.
Auer GK, Weibel DB. Bacterial Cell Mechanics. Biochemistry. 2017 ;56:3710-3724.
Auer BM, Skinner JL. IR and Raman spectra of liquid water: Theory and interpretation. Journal of Chemical Physics. 2008 ;128.
Auer BM, Skinner JL. Dynamical effects in line shapes for coupled chromophores: Time-averaging approximation. Journal of Chemical Physics. 2007 ;127.
Auer BM, Skinner JL. Vibrational sum-frequency spectroscopy of the liquid/vapor interface for dilute HOD in D2O. Journal of Chemical Physics. 2008 ;129.
Aubin SMJ, Sun ZM, Guzei IA, Rheingold AL, Christou G, Hendrickson DN. Single-molecule magnets: isomeric Mn12O12(O(2)CC(6)H(4)Me4)(16)(H2O)(4) complexes exhibiting different rates of resonant magnetization tunnelling. Chemical Communications. 1997 :2239-2240.
Aubin SMJ, Sun ZM, Eppley HJ, Rumberger EM, Guzei IA, Folting K, Gantzel PK, Rheingold AL, Christou G, Hendrickson DN. Single-molecule magnets: Jahn-Teller isomerism and the origin of two magnetization relaxation processes in Mn(12) complexes. Inorganic Chemistry. 2001 ;40:2127-2146.
Attie AD, Raines RT. Analysis of Receptor-Ligand Interactions. Journal of Chemical Education. 1995 ;72:119-124.
Atanasov M, Brunold TC, Gudel HU, Daul C. Charge-transfer spectra and bonding in tetrahedral Mn-VI, Cr-V, and V-IV and Mn-VII, Cr-VI and V-V oxo anions. Inorganic Chemistry. 1998 ;37:4589-4602.
Asuke T, West R. Poly(normal-butyl-normal-hexylsilylene), a liquid-crystalline polysilane. Macromolecules. 1991 ;24:343-344.
Asuke T, West R. Properties of some polysilane polymers: (n-PrSiMe) n , (i-PrSiMe) n , and (sec-BuSiMe) n . Journal of Inorganic and Organometallic Polymers. 1995 ;5:31-42.
Aston C, Hiort C, Schwartz DC. Optical mapping: an approach for fine mapping. Methods in Enzymology. 1999 ;303:55-73.
Aston C, Mishra B, Schwartz DC. Optical mapping and its potential for large-scale sequencing projects. Trends in Biotechnology. 1999 ;17:297-302.
Asplund MC, Zanni MT, Hochstrasser RM. Two-dimensional infrared spectroscopy of peptides by phase-controlled femtosecond vibrational photon echoes. Proceedings of the National Academy of Sciences of the United States of America. 2000 ;97:8219-8224.
Asmis KR, Santambrogio G, Zhou J, Garand E, Headrick J, Goebbert D, Johnson MA, Neumark DM. Vibrational spectroscopy of hydrated electron clusters (H2O)(15-50)(-) via infrared multiple photon dissociation. Journal of Chemical Physics. 2007 ;126.
Asbury JB, Steinel T, Kwak K, Corcelli SA, Lawrence CP, Skinner JL, Fayer MD. Dynamics of water probed with vibrational echo correlation spectroscopy. Journal of Chemical Physics. 2004 ;121:12431-12446.
Asbury JB, Steinel T, Stromberg C, Corcelli SA, Lawrence CP, Skinner JL, Fayer MD. Water dynamics: Vibrational echo correlation spectroscopy and comparison to molecular dynamics simulations. Journal of Physical Chemistry A. 2004 ;108:1107-1119.
Aryal S, Pilla S, Gong S. Multifunctional nano-micelles formed by amphiphilic gold-polycaprolactone- methoxy poly(ethylene glycol) (Au-PCL-MPEG) nanoparticles for potential drug delivery applications. Journal of Nanoscience and Nanotechnology. 2009 ;9:5701-5708.
Aryal S, Grailer JJ, Pilla S, Steeber DA, Gong S. Doxorubicin conjugated gold nanoparticles as water-soluble and pH-responsive anticancer drug nanocarriers. Journal of Materials Chemistry. 2009 ;19:7879-7884.
Aryal S, Prabaharan M, Pilla S, Gong S. Biodegradable and biocompatible multi-arm star amphiphilic block copolymer as a carrier for hydrophobic drug delivery. International Journal of Biological Macromolecules. 2009 ;44:346-352.
Arrington CA, West R, Michl J. On the thermal interconversion of matrix-isolated dimethylsilylene and 2silapropene - their reactions with oxygen atom donors. Journal of the American Chemical Society. 1983 ;105:6176-6177.
Aronoff MR, Gold B, Raines RT. 1,3-Dipolar Cycloadditions of Diazo Compounds in the Presence of Azides. Organic Letters. 2016 ;18:1538-1541.
Aronoff MR, VanVeller B, Raines RT. Detection of Boronic Acids through Excited-State Intramolecular Proton-Transfer Fluorescence. Organic Letters. 2013 ;15:5382-5385.
Aronoff MR, Gold B, Raines RT. Rapid cycloaddition of a diazo group with an unstrained dipolarophile. Tetrahedron Letters. 2016 ;57:2347-2350.
Arnold U, Huck BR, Gellman SH, Raines RT. Protein prosthesis: beta-peptides as reverse-turn surrogates. Protein Science. 2013 ;22:274-279.
Arnold U, Hinderaker MP, Koditz J, Golbik R, Ulbrich-Hofmann R, Raines RT. Protein prosthesis: A nonnatural residue accelerates folding and increases stability. Journal of the American Chemical Society. 2003 ;125:7500-7501.
Arnold U, Raines RT. Replacing a single atom accelerates the folding of a protein and increases its thermostability. Organic & Biomolecular Chemistry. 2016 ;14:6780-6785.
Arnold U, Hinderaker MP, Nilsson BL, Huck BR, Gellman SH, Raines RT. Protein prosthesis: A semisynthetic enzyme with a beta-peptide reverse turn. Journal of the American Chemical Society. 2002 ;124:8522-8523.
Arnold U, Hinderaker MP, Nilsson BL, Huck BR, Gellman SH, Raines RT. Semisynthesis of proteins containing nonnatural modules. Biochemistry. 2001 ;40:8627-8628.
Arn PH, Ketabgian AA, Smith C, Schwartz DC, Jabs EWang. The macromolecular organization of human centromeric regions. Progress in Clinical and Biological Research. 1989 ;318:1-8.
Arn PH, Li X, Smith C, Hsu M, Schwartz DC, Jabs EWang. Analysis of DNA restriction fragments greater than 5.7 Mb in size from the centromeric region of human chromosomes. Mammalian Genome. 1991 ;1:249-54.

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