All Faculty and Research Staff Publications

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Rabaglia ME, Gray-Keller MP, Frey BL, Shortreed MR, Smith LM, Attie AD. alpha-Ketoisocaproate-induced hypersecretion of insulin by islets from diabetes-susceptible mice. American Journal of Physiology - Endocrinology & Metabolism. 2005 ;289:E218-E224.
Frey BL, Lin Y, Westphall MS, Smith LM. Controlling gas-phase reactions for efficient charge reduction electrospray mass spectrometry of intact proteins. Journal of the American Society for Mass Spectrometry. 2005 ;16:1876-1887.
Murray JK, Farooqi B, Sadowsky JD, Scalf M, Freund WA, Smith LM, Chen JD, Gellman SH. Efficient synthesis of a beta-peptide combinatorial library with microwave irradiation. Journal of the American Chemical Society. 2005 ;127:13271-13280.
Peelen D, Smith LM. Immobilization of amine-modified oligonucleotides on aldehyde-terminated alkanethiol monolayers on gold. Langmuir. 2005 ;21:266-271.
Zheng T, Peelen D, Smith LM. Lectin arrays for profiling cell surface carbohydrate expression. Journal of the American Chemical Society. 2005 ;127:9982-9983.
Chen Y, Shortreed MR, Olivier M, Smith LM. Parallel single nucleotide polymorphism genotyping by surface invasive cleavage with universal detection. Analytical Chemistry. 2005 ;77:2400-2405.
Nie B, Shortreed MR, Smith LM. Scoring single-nucleotide polymorphisms at the single-molecule level by counting individual DNA cleavage events on surfaces. Analytical Chemistry. 2005 ;77:6594-6600.
Shortreed MR, Chang SB, Hong DG, Phillips M, Campion B, Tulpan DC, Andronescu M, Condon A, Hoos HH, Smith LM. A thermodynamic approach to designing structure-free combinatorial DNA word sets. Nucleic Acids Research. 2005 ;33:4965-4977.
Tulpan D, Andronescu M, Chang SB, Shortreed MR, Condon A, Hoos HH, Smith LM. Thermodynamically based DNA strand design. Nucleic Acids Research. 2005 ;33:4951-4964.
Book AJ, Yang PZ, Scalf M, Smith LM, Vierstra RD. Tripeptidyl peptidase II. An oligomeric protease complex from Arabidopsis. Plant Physiology. 2005 ;138:1046-1057.
Cai W, Lin Z, Strother T, Smith LM, Hamers RJ. Chemical modification and patterning of iodine-terminated silicon surfaces using visible light. Journal of Physical Chemistry B. 2002 ;106:2656-2664.
Moradian A, Scalf M, Westphall MS, Smith LM, Douglas DJ. Collision cross sections of gas phase DNA ions. International Journal of Mass Spectrometry. 2002 ;219:161-170.
Lin Z, Strother T, Cai W, Cao XP, Smith LM, Hamers RJ. DNA attachment and hybridization at the silicon (100) surface. Langmuir. 2002 ;18:788-796.
Yang WS, Auciello O, Butler JE, Cai W, Carlisle JA, Gerbi J, Gruen DM, Knickerbocker T, Lasseter TL, Russell JN, et al. DNA-modified nanocrystalline diamond thin-films as stable, biologically active substrates. Nature Materials. 2002 ;1:253-257.
Berggren WT, Takova T, Olson MC, Eis PS, Kwiatkowski RW, Smith LM. Multiplexed gene expression analysis using the invader RNA assay with MALDI-TOF mass spectrometry detection. Analytical ChemistryAnalytical Chemistry. 2002 ;74:1745-1750.
Strother T, Knickerbocker T, Russell JN, Butler JE, Smith LM, Hamers RJ. Photochemical functionalization of diamond films. Langmuir. 2002 ;18:968-971.
Berggren WT, Westphall MS, Smith LM. Single-pulse nanoelectrospray ionization. Analytical Chemistry. 2002 ;74:3443-3448.
Lu MC, Hall JG, Shortreed MR, Wang LM, Berggren WT, Stevens PW, Kelso DM, Lyamichev V, Neri B, Skinner JL, et al. Structure-specific DNA cleavage on surfaces. Journal of the American Chemical Society. 2002 ;124:7924-7931.
Lu MC, Shortreed MR, Hall JG, Wang LM, Berggren T, Stevens PW, Kelso DM, Lyamichev V, Neri B, Smith LM. A surface invasive cleavage assay for highly parallel SNP analysis. Human Mutation. 2002 ;19:416-422.
Fei ZD, Smith LM. Analysis of single nucleotide polymorphisms by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry. 2000 ;14:950-959.
Scalf M, Westphall MS, Smith LM. Charge reduction electrospray mass spectrometry. Analytical Chemistry. 2000 ;72:52-60.
Ebeling DD, Westphall MS, Scalf M, Smith LM. Corona discharge in charge reduction electrospray mass spectrometry. Analytical Chemistry. 2000 ;72:5158-5161.
Strother T, Hamers RJ, Smith LM. Covalent attachment of oligodeoxyribonucleotides to amine-modified Si (001) surfaces. Nucleic Acids Research. 2000 ;28:3535-3541.
Liu QH, Wang LM, Frutos AG, Condon AE, Corn RM, Smith LM. DNA computing on surfaces. Nature. 2000 ;403:175-179.
Griffin TJ, Smith LM. Genetic identification by mass spectrometric analysis of single-nucleotide polymorphisms: Ternary encoding of genotypes. Analytical Chemistry. 2000 ;72:3298-3302.
Gillmor SD, Thiel AJ, Strother TC, Smith LM, Lagally MG. Hydrophilic/hydrophobic patterned surfaces as templates for DNA arrays. Langmuir. 2000 ;16:7223-7228.
Wang LM, Liu QH, Corn RM, Condon AE, Smith LM. Multiple word DNA computing on surfaces. Journal of the American Chemical Society. 2000 ;122:7435-7440.
Griffin TJ, Smith LM. Single-nucleotide polymorphism analysis by MALDI-TOF mass spectrometry. Trends in Biotechnology. 2000 ;18:77-84.
Chen X, Smith LM, Bradbury EM. Site-specific mass tagging with stable isotopes in proteins for accurate and efficient protein identification. Analytical Chemistry. 2000 ;72:1134-1143.
Strother T, Cai W, Zhao XS, Hamers RJ, Smith LM. Synthesis and characterization of DNA-modified silicon (111) surfaces. Journal of the American Chemical Society. 2000 ;122:1205-1209.
Scalf M, Westphall MS, Krause J, Kaufman SL, Smith LM. Controlling charge states of large ions. Science. 1999 ;283:194-197.
Griffin TJ, Hall JG, Prudent JR, Smith LM. Direct genetic analysis by matrix-assisted laser desorption/ionization mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 1999 ;96:6301-6306.
Krause J, Scalf M, Smith LM. High resolution characterization of DNA fragment ions produced by ultraviolet matrix-assisted laser desorption/ionization using linear and reflecting time-of-flight mass spectrometry. Journal of the American Society for Mass Spectrometry. 1999 ;10:423-429.
Griffin TJ, Tang W, Smith LM. MALDI-TOF mass spectrometric detection of PNA hybrids for genetic analysis. Pept. Nucleic Acids. 1999 :143-154.
Liu Q, Frutos AG, Wang L, Thiel AJ, Gillmor SD, Strother CT, Condon AE, Corn RM, Lagally MG, Smith LM. Progress toward demonstration of a surface based DNA computation: a one word approach to solve a model satisfiability problem. Biosystems. 1999 ;52:25-33.
Chen X, Fei ZD, Smith LM, Bradbury EM, Majidi V. Stable-isotope-assisted MALDI-TOF mass spectrometry for accurate determination of nucleotide compositions of PCR products. Analytical Chemistry. 1999 ;71:3118-3125.
Liu Q, Guo Z, Fei Z, Condon AE, Corn RM, Lagally MG, Smith LM. A surface-based approach to DNA computation. DNA Based Computers II. DIMACS Workshop. 1999 :123-32.
Wang L, Liu Q, Frutos AG, Gillmor SD, Thiel AJ, Strother TC, Condon AE, Corn RM, Lagally MG, Smith LM. Surface-based DNA computing operations: DESTROY and READOUT. Biosystems. 1999 ;52:189-191.