All Faculty and Research Staff Publications

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2006
Sun B, Colavita PE, Kim H, Lockett M, Marcus MS, Smith LM, Hamers RJ. Covalent Photochemical Functionalization of Amorphous Carbon Thin Films for Integrated Real-Time Biosensing. Langmuir. 2006 ;22:9598-9605.
Zhang X, Scalf M, Berggren TW, Westphall MS, Smith LM. Identification of mammalian cell lines using MALDI-TOF and LC-ESI-MS/MS mass spectrometry. Journal of the American Society for Mass Spectrometry. 2006 ;17:490-499.
Shortreed MR, Lamos SM, Frey BL, Phillips MF, Patel M, Belshaw PJ, Smith LM. Ionizable isotopic labeling reagent for relative quantification of amine metabolites by mass spectrometry. Analytical Chemistry. 2006 ;78:6398-6403.
Lamos SM, Krusemark CJ, McGee CJ, Scalf M, Smith LM, Belshaw PJ. Mixed isotope photoaffinity reagents for identification of small-molecule targets by mass spectrometry. Angewandte Chemie-International Edition. 2006 ;45:4329-4333.
Smith LM. Nanostructures - The manifold faces of DNA. Nature. 2006 ;440:283-284.
Nie B, Shortreed MR, Smith LM. Quantitative detection of individual cleaved DNA molecules on surfaces using gold nanoparticles and scanning electron microscope imaging. Analytical Chemistry. 2006 ;78:1528-1534.
Peelen D, Kodoyianni V, Lee J, Zheng T, Shortreed MR, Smith LM. Specific capture of mammalian cells by cell surface receptor binding to ligand immobilized on gold thin films. Journal of Proteome Research. 2006 ;5:1580-1585.
2005
Rabaglia ME, Gray-Keller MP, Frey BL, Shortreed MR, Smith LM, Attie AD. alpha-Ketoisocaproate-induced hypersecretion of insulin by islets from diabetes-susceptible mice. American Journal of Physiology - Endocrinology & Metabolism. 2005 ;289:E218-E224.
Frey BL, Lin Y, Westphall MS, Smith LM. Controlling gas-phase reactions for efficient charge reduction electrospray mass spectrometry of intact proteins. Journal of the American Society for Mass Spectrometry. 2005 ;16:1876-1887.
Murray JK, Farooqi B, Sadowsky JD, Scalf M, Freund WA, Smith LM, Chen JD, Gellman SH. Efficient synthesis of a beta-peptide combinatorial library with microwave irradiation. Journal of the American Chemical Society. 2005 ;127:13271-13280.
Peelen D, Smith LM. Immobilization of amine-modified oligonucleotides on aldehyde-terminated alkanethiol monolayers on gold. Langmuir. 2005 ;21:266-271.
Zheng T, Peelen D, Smith LM. Lectin arrays for profiling cell surface carbohydrate expression. Journal of the American Chemical Society. 2005 ;127:9982-9983.
Chen Y, Shortreed MR, Olivier M, Smith LM. Parallel single nucleotide polymorphism genotyping by surface invasive cleavage with universal detection. Analytical Chemistry. 2005 ;77:2400-2405.
Nie B, Shortreed MR, Smith LM. Scoring single-nucleotide polymorphisms at the single-molecule level by counting individual DNA cleavage events on surfaces. Analytical Chemistry. 2005 ;77:6594-6600.
Shortreed MR, Chang SB, Hong DG, Phillips M, Campion B, Tulpan DC, Andronescu M, Condon A, Hoos HH, Smith LM. A thermodynamic approach to designing structure-free combinatorial DNA word sets. Nucleic Acids Research. 2005 ;33:4965-4977.
Tulpan D, Andronescu M, Chang SB, Shortreed MR, Condon A, Hoos HH, Smith LM. Thermodynamically based DNA strand design. Nucleic Acids Research. 2005 ;33:4951-4964.
Book AJ, Yang PZ, Scalf M, Smith LM, Vierstra RD. Tripeptidyl peptidase II. An oligomeric protease complex from Arabidopsis. Plant Physiology. 2005 ;138:1046-1057.
2002
Cai W, Lin Z, Strother T, Smith LM, Hamers RJ. Chemical modification and patterning of iodine-terminated silicon surfaces using visible light. Journal of Physical Chemistry B. 2002 ;106:2656-2664.
Moradian A, Scalf M, Westphall MS, Smith LM, Douglas DJ. Collision cross sections of gas phase DNA ions. International Journal of Mass Spectrometry. 2002 ;219:161-170.
Lin Z, Strother T, Cai W, Cao XP, Smith LM, Hamers RJ. DNA attachment and hybridization at the silicon (100) surface. Langmuir. 2002 ;18:788-796.
Yang WS, Auciello O, Butler JE, Cai W, Carlisle JA, Gerbi J, Gruen DM, Knickerbocker T, Lasseter TL, Russell JN, et al. DNA-modified nanocrystalline diamond thin-films as stable, biologically active substrates. Nature Materials. 2002 ;1:253-257.
Berggren WT, Takova T, Olson MC, Eis PS, Kwiatkowski RW, Smith LM. Multiplexed gene expression analysis using the invader RNA assay with MALDI-TOF mass spectrometry detection. Analytical ChemistryAnalytical Chemistry. 2002 ;74:1745-1750.
Strother T, Knickerbocker T, Russell JN, Butler JE, Smith LM, Hamers RJ. Photochemical functionalization of diamond films. Langmuir. 2002 ;18:968-971.
Berggren WT, Westphall MS, Smith LM. Single-pulse nanoelectrospray ionization. Analytical Chemistry. 2002 ;74:3443-3448.
Lu MC, Hall JG, Shortreed MR, Wang LM, Berggren WT, Stevens PW, Kelso DM, Lyamichev V, Neri B, Skinner JL, et al. Structure-specific DNA cleavage on surfaces. Journal of the American Chemical Society. 2002 ;124:7924-7931.
Lu MC, Shortreed MR, Hall JG, Wang LM, Berggren T, Stevens PW, Kelso DM, Lyamichev V, Neri B, Smith LM. A surface invasive cleavage assay for highly parallel SNP analysis. Human Mutation. 2002 ;19:416-422.
2000
Fei ZD, Smith LM. Analysis of single nucleotide polymorphisms by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry. 2000 ;14:950-959.
Scalf M, Westphall MS, Smith LM. Charge reduction electrospray mass spectrometry. Analytical Chemistry. 2000 ;72:52-60.
Ebeling DD, Westphall MS, Scalf M, Smith LM. Corona discharge in charge reduction electrospray mass spectrometry. Analytical Chemistry. 2000 ;72:5158-5161.
Strother T, Hamers RJ, Smith LM. Covalent attachment of oligodeoxyribonucleotides to amine-modified Si (001) surfaces. Nucleic Acids Research. 2000 ;28:3535-3541.
Liu QH, Wang LM, Frutos AG, Condon AE, Corn RM, Smith LM. DNA computing on surfaces. Nature. 2000 ;403:175-179.
Griffin TJ, Smith LM. Genetic identification by mass spectrometric analysis of single-nucleotide polymorphisms: Ternary encoding of genotypes. Analytical Chemistry. 2000 ;72:3298-3302.
Gillmor SD, Thiel AJ, Strother TC, Smith LM, Lagally MG. Hydrophilic/hydrophobic patterned surfaces as templates for DNA arrays. Langmuir. 2000 ;16:7223-7228.
Wang LM, Liu QH, Corn RM, Condon AE, Smith LM. Multiple word DNA computing on surfaces. Journal of the American Chemical Society. 2000 ;122:7435-7440.
Griffin TJ, Smith LM. Single-nucleotide polymorphism analysis by MALDI-TOF mass spectrometry. Trends in Biotechnology. 2000 ;18:77-84.
Chen X, Smith LM, Bradbury EM. Site-specific mass tagging with stable isotopes in proteins for accurate and efficient protein identification. Analytical Chemistry. 2000 ;72:1134-1143.
Strother T, Cai W, Zhao XS, Hamers RJ, Smith LM. Synthesis and characterization of DNA-modified silicon (111) surfaces. Journal of the American Chemical Society. 2000 ;122:1205-1209.

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