All Faculty and Research Staff Publications

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2012
Dunkelberger EB, Buchanan LE, Marek P, Cao P, Raleigh DP, Zanni MT. Deamidation Accelerates Amyloid Formation and Alters Amylin Fiber Structure. Journal of the American Chemical Society. 2012 ;134:12658-12667.
Manor J, Feldblum ES, Zanni MT, Arkin IT. Environment Polarity in Proteins Mapped Noninvasively by FTIR Spectroscopy. Journal of Physical Chemistry Letters. 2012 ;3:939-944.
Woys AM, Almeida AM, Wang L, Chiu CC, McGovern M, de Pablo JJ, Skinner JL, Gellman SH, Zanni MT. Parallel beta-Sheet Vibrational Couplings Revealed by 2D IR Spectroscopy of an Isotopically Labeled Macrocycle: Quantitative Benchmark for the Interpretation of Amyloid and Protein Infrared Spectra. Journal of the American Chemical Society. 2012 ;134:19118-19128.
Grechko M, Zanni MT. Quantification of transition dipole strengths using 1D and 2D spectroscopy for the identification of molecular structures via exciton delocalization: Application to alpha-helices. Journal of Chemical Physics. 2012 ;137.
Moran SD, Decatur SM, Zanni MT. Structural and Sequence Analysis of the Human gamma D-Crystallin Amyloid Fibril Core Using 2D IR Spectroscopy, Segmental C-13 Labeling, and Mass Spectrometry. Journal of the American Chemical Society. 2012 ;134:18410-18416.
Middleton CT, Marek P, Cao P, Chiu CC, Singh S, Woys AM, de Pablo JJ, Raleigh DP, Zanni MT. Two-dimensional infrared spectroscopy reveals the complex behaviour of an amyloid fibril inhibitor. Nature Chemistry. 2012 ;4:355-360.
Moran SD, Woys AM, Buchanan LE, Bixby E, Decatur SM, Zanni MT. Two-dimensional IR spectroscopy and segmental C-13 labeling reveals the domain structure of human gamma D-crystallin amyloid fibrils. Proceedings of the National Academy of Sciences of the United States of America. 2012 ;109:3329-3334.
2010
Woys AM, Lin Y-S, Reddy AS, Xiong W, De Pablo JJ, Skinner JL, Zanni MT. 2D IR Line Shapes Probe Ovispirin Peptide Conformation and Depth in Lipid Bilayers. Journal of the American Chemical Society. 2010 ;132:2832-2838.
Paoprasert P, Laaser JE, Xiong W, Franking RA, Hamers RJ, Zanni MT, Schmidt JR, Gopalan P. Bridge-Dependent Interfacial Electron Transfer from Rhenium-Bipyridine Complexes to TiO2 Nanocrystalline Thin Films. Journal of Physical Chemistry C. 2010 ;114:9898-9907.
Marek P, Woys AM, Sutton K, Zanni MT, Raleigh DP. Efficient Microwave-Assisted Synthesis of Human Islet Amyloid Polypeptide Designed to Facilitate the Specific Incorporation of Labeled Amino Acids. Organic Letters. 2010 ;12:4848-4851.
Marek P, Mukherjee S, Zanni MT, Raleigh DP. Residue-Specific, Real-Time Characterization of Lag-Phase Species and Fibril Growth During Amyloid Formation: A Combined Fluorescence and IR Study of p-Cyanophenylalanine Analogs of Islet Amyloid Polypeptide. Journal of Molecular Biology. 2010 ;400:878-888.
Middleton CT, Woys AM, Mukherjee SS, Zanni MT. Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy. Methods. 2010 ;52:12-22.
Reddy AS, Wang L, Lin Y-S, Ling Y, Chopra M, Zanni MT, Skinner JL, De Pablo JJ. Solution Structures of Rat Amylin Peptide: Simulation, Theory, and Experiment. Biophysical Journal. 2010 ;98:443-451.
Reddy AS, Wang L, Singh S, Ling YL, Buchanan L, Zanni MT, Skinner JL, De Pablo JJ. Stable and Metastable States of Human Amylin in Solution. Biophysical Journal. 2010 ;99:2208-2216.
Meng F, Abedini A, Plesner A, Middleton CT, Potter KJ, Zanni MT, Verchere BC, Raleigh DP. The Sulfated Triphenyl Methane Derivative Acid Fuchsin Is a Potent Inhibitor of Amyloid Formation by Human Islet Amyloid Polypeptide and Protects against the Toxic Effects of Amyloid Formation. Journal of Molecular Biology. 2010 ;400:555-566.
2009
Xiong W, Strasfeld DB, Shim SH, Zanni MT. Automated 2D IR spectrometer mitigates the influence of high optical densities. Vibrational Spectroscopy. 2009 ;50:136-142.
Lin YS, Shorb JM, Mukherjee P, Zanni MT, Skinner JL. Empirical Amide I Vibrational Frequency Map: Application to 2D-IR Line Shapes for Isotope-Edited Membrane Peptide Bundles. Journal of Physical Chemistry B. 2009 ;113:592-602.
Manor J, Mukherjee P, Lin YS, Leonov H, Skinner JL, Zanni MT, Arkin IT. Gating Mechanism of the Influenza A M2 Channel Revealed by 1D and 2D IR Spectroscopies. Structure. 2009 :247-254.
Shim SH, Zanni MT. How to turn your pump-probe instrument into a multidimensional spectrometer: 2D IR and Vis spectroscopies via pulse shaping. Physical Chemistry Chemical Physics. 2009 ;11:748-761.
Strasfeld DB, Middleton CT, Zanni MT. Mode selectivity with polarization shaping in the mid-IR. New Journal of Physics. 2009 ;11.
Strasfeld DB, Shim SH, Zanni MT. New Advances in Mid-Ir Pulse Shaping and Its Application to 2d Ir Spectroscopy and Ground-State Coherent Control. Advances in Chemical Physics, Vol 141. 2009 ;141:1-28.
Middleton CT, Strasfeld DB, Zanni MT. Polarization shaping in the mid-IR and polarization-based balanced heterodyne detection with application to 2D IR spectroscopy. Optics Express. 2009 ;17:14526-14533.
Xiong W, Laaser JE, Paoprasert P, Franking RA, Hamers RJ, Gopalan P, Zanni MT. Transient 2D IR Spectroscopy of Charge Injection in Dye-Sensitized Nanocrystalline Thin Films. Journal of the American Chemical Society. 2009 ;131:18040-+.
Ling YL, Strasfeld DB, Shim SH, Raleigh DP, Zanni MT. Two-dimensional Infrared Spectroscopy Provides Evidence of an Intermediate in the Membrane-catalyzed Assembly of Diabetic Amyloid. Journal of Physical Chemistry B. 2009 :2498-2505.
Shim SH, Gupta R, Ling YL, Strasfeld DB, Raleigh DP, Zanni MT. Two-dimensional IR spectroscopy and isotope labeling defines the pathway of amyloid formation with residue-specific resolution. Proceedings of the National Academy of Sciences of the United States of America. 2009 ;106:6614-6619.
2003
Krummel AT, Mukherjee P, Zanni MT. Inter and intrastrand vibrational coupling in DNA studied with heterodyned 2D-IR spectroscopy. Journal of Physical Chemistry BJournal of Physical Chemistry B. 2003 ;107:9165-9169.

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