All Department Publications

Found 318 results
Author Title Type [ Year(Asc)]
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2013
Yoo J, Cui Q. Three-Dimensional Stress Field around a Membrane Protein: Atomistic and Coarse-Grained Simulation Analysis of Gramicidin A. Biophysical Journal. 2013;104:117-127.
Peng Y, Chen X, Zhang H, Xu QG, Hacker TA, Ge Y. Top-down Targeted Proteomics for Deep Sequencing of Tropomyosin Isoforms. Journal of Proteome Research. 2013;12:204-215.
Buchanan EG, Dean JC, Zwier TS, Sibert EL. Towards a first-principles model of Fermi resonance in the alkyl CH stretch region: Application to 1,2-diphenylethane and 2,2,2-paracyclophane. Journal of Chemical Physics. 2013;138.
2012
Hayashi R, Ma ZX, Hsung RP. A Tandem 1,3-H-Shift-6 pi-Electrocyclization-Cyclic 2-Amido-diene Intramolecular Diels-Alder Cycloaddition Approach to BCD-Ring of Atropurpuran. Organic Letters. 2012;14:252-255.
Wang L, Skinner JL. Thermally Induced Protein Unfolding Probed by Isotope-Edited IR Spectroscopy. Journal of Physical Chemistry B. 2012;116:9627-9634.
Bar-Ilan O, Louis KM, Yang SP, Pedersen JA, Hamers RJ, Peterson RE, Heideman W, I Rx CRVP. Titanium dioxide nanoparticles produce phototoxicity in the developing zebrafish. Nanotoxicology. 2012;6:670-679.
Ma ZX, Feltenberger JB, Hsung RP. Total Syntheses of Chelidonine and Norchelidonine via an Enamide-Benzyne- 2+2 Cycloaddition Cascade. Organic Letters. 2012;14:2742-2745.
Yu K, Kiesling K, Schmidt JR, Usa M PRBVP. Trace Flue Gas Contaminants Poison Coordinatively Unsaturated Metal-Organic Frameworks: Implications for CO2 Adsorption and Separation. Journal of Physical Chemistry C. 2012;116:20480-20488.
Sekhar A, Santiago M, Lam HN, Lee JH, Cavagnero S. Transient interactions of a slow-folding protein with the Hsp70 chaperone machinery. Protein Science. 2012;21:1042-1055.
Tyson EL, Ament MS, Yoon TP. Transition Metal Photoredox Catalysis of Radical Thiol-Ene Reactions. The Journal of Organic Chemistry [Internet]. 2012:null. Available from: http://pubs.acs.org/doi/abs/10.1021/jo3020825
Levine MN, Raines RT. Trimethyl lock: a trigger for molecular release in chemistry, biology, and pharmacology. Chemical Science. 2012;3:2412-2420.
Casey CP, Guan HR. Trimethylsilyl-Substituted Hydroxycyclopentadienyl Ruthenium Hydrides as Benchmarks To Probe Ligand and Metal Effects on the Reactivity of Shvo Type Complexes. Organometallics. 2012;31:2631-2638.
Desai KK, Raines RT. tRNA Ligase Catalyzes the GTP-Dependent Ligation of RNA with 3 '-Phosphate and 5 '-Hydroxyl Termini. Biochemistry. 2012;51:1333-1335.
Middleton CT, Marek P, Cao P, Chiu CC, Singh S, Woys AM, de Pablo JJ, Raleigh DP, Zanni MT. Two-dimensional infrared spectroscopy reveals the complex behaviour of an amyloid fibril inhibitor. Nature Chemistry. 2012;4:355-360.
Moran SD, Woys AM, Buchanan LE, Bixby E, Decatur SM, Zanni MT. Two-dimensional IR spectroscopy and segmental C-13 labeling reveals the domain structure of human gamma D-crystallin amyloid fibrils. Proceedings of the National Academy of Sciences of the United States of America. 2012;109:3329-3334.
2011
Paeng K, Lee H-N, Swallen SF, Ediger MD. Temperature-ramping measurement of dye reorientation to probe molecular motion in polymer glasses. Journal of Chemical Physics. 2011;134.
Yang Y, Mkhonto D, Cui Q, Sahai N. Theoretical Study of Bone Sialoprotein in Bone Biomineralization. Cells Tissues Organs. 2011;194:182-187.
Weber RL, Ye Y, Banik SM, Elabd YA, Hickner MA, Mahanthappa MK. Thermal and Ion Transport Properties of Hydrophilic and Hydrophobic Polymerized Styrenic Imidazolium Ionic Liquids. Journal of Polymer Science Part B-Polymer Physics. 2011;49:1287-1296.
Andrew TL, Swager TM. Thermally Polymerized Rylene Nanoparticles. Macromolecules. 2011;44:2276-2281.
McInnis CE, Blackwell HE. Thiolactone modulators of quorum sensing revealed through library design and screening. Bioorganic & Medicinal Chemistry. 2011;19:4820-4828.
Laaser JE, Xiong W, Zanni MT. Time-Domain SFG Spectroscopy Using Mid-IR Pulse Shaping: Practical and Intrinsic Advantages. Journal of Physical Chemistry B. 2011;115:2536-2546.
Smith LM, Shortreed MR, Olivier M. To understand the whole, you must know the parts: unraveling the roles of protein-DNA interactions in genome regulation. Analyst. 2011;136(15):3060-5.
Xu FM, Xu QG, Dong XT, Guy M, Guner H, Hacker TA, Ge Y. Top-down high-resolution electron capture dissociation mass spectrometry for comprehensive characterization of post-translational modifications in Rhesus monkey cardiac troponin I. International Journal of Mass Spectrometry. 2011;305:95-102.
Zhang J, Guy MJ, Norman HS, Chen YC, Xu QG, Dong XT, Guner H, Wang SJ, Kohmoto T, Young KH, et al. Top-Down Quantitative Proteomics Identified Phosphorylation of Cardiac Troponin I as a Candidate Biomarker for Chronic Heart Failure. Journal of Proteome Research. 2011;10:4054-4065.
Buchanan GS, Cole KP, Tang Y, Hsung RP. Total Synthesis of (+/-)-Phomactin A. Lessons Learned from Respecting a Challenging Structural Topology. Journal of Organic Chemistry. 2011;76:7027-7039.
Pinkas DM, Ding S, Raines RT, Barron AE. Tunable, Post-translational Hydroxylation of Collagen Domains in Escherichia coli. ACS Chemical Biology. 2011;6:320-324.
Frischknecht AL, Yethiraj A. Two- and three-body interactions among nanoparticles in a polymer melt. Journal of Chemical Physics. 2011;134.
Figueroa R, Feltenberger JB, Guevarra CC, Hsung RP. Two remarkable epimerizations imperative for the success of an asymmetric total synthesis of (+)-aigialospirol. Science China-Chemistry. 2011;54:31-42.
2010
Chae PS, Gotfryd K, Pacyna J, Miercke LJW, Rasmussen SGF, Robbins RA, Rana RR, Loland CJ, Kobilka B, Stroud R, et al. Tandem Facial Amphiphiles for Membrane Protein Stabilization. Journal of the American Chemical Society. 2010;132:16750-16752.
Casey CP. Tandem Rh/Ru Hydroformylation/Hydrogenation of Terminal Olefins to Linear Alcohols. Chemcatchem. 2010;2:1209-1211.
Hayashi R, Feltenberger JB, Hsung RP. Torquoselective Ring Closures of Chiral Amido Trienes Derived from Allenamides. A Tandem Allene Isomerization-Pericyclic Ring-Closure-Intramolecular Diels-Alder Cycloaddition. Organic Letters. 2010;12:1152-1155.
Radha AV, Forbes TZ, Killian CE, Gilbert P, Navrotsky A. Transformation and crystallization energetics of synthetic and biogenic amorphous calcium carbonate. Proceedings of the National Academy of Sciences of the United States of America. 2010;107:16438-16443.
Swallen SF, Windsor K, McMahon RJ, Ediger MD, Mates TE. Transformation of Stable Glasses into Supercooled Liquids: Growth Fronts and Anomalously Fast Liquid Diffusion. Journal of Physical Chemistry B. 2010;114:2635-2643.
Hopf H, Mlynek C, McMahon RJ, Menke JL, Lesarri A, Rosemeyer M, Grabow J-U. On the Trimerization of Cyanoacetylene: Mechanism of Formation of Tricyanobenzene Isomers and Laboratory Detection of Their Radio Spectra. Chemistry-A European Journal. 2010;16:14115-14123.
Chae PS, Laible PD, Gellman SH. Tripod amphiphiles for membrane protein manipulation. Molecular Biosystems. 2010;6:89-94.
Jansen TLC, Auer BM, Yang M, Skinner JL. Two-dimensional infrared spectroscopy and ultrafast anisotropy decay of water. Journal of Chemical Physics. 2010;132:224503.
2009
Saracco SA, Hansson M, Scalf M, Walker JM, Smith LM, Vierstra RD. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Plant Journal. 2009;59:344-358.
Berry JF. Terminal Nitrido and Imido Complexes of the Late Transition Metals. Comments on Inorganic Chemistry. 2009;30:28-66.
May JF, Splain RA, Brotschi C, Kiessling LL. A tethering mechanism for length control in a processive carbohydrate polymerization. Proceedings of the National Academy of Sciences of the United States of America. 2009;106:11851-11856.
Coppersmith SN, Gilbert P, Metzler RA. Theoretical characterization of a model of aragonite crystal orientation in red abalone nacre. Journal of Physics a-Mathematical and Theoretical. 2009;42.
Lohse AG, Hsung RP. Thermal Intramolecular 4+2 Cycloadditions of Allenamides: A Stereoselective Tandem Propargyl Amide Isomerization-Cycloaddition. Organic Letters. 2009;11:3430-3433.
Chen RB, Hui LM, Sturm RM, Li LJ. Three Dimensional Mapping of Neuropeptides and Lipids in Crustacean Brain by Mass Spectral Imaging. Journal of the American Society for Mass Spectrometry. 2009;20:1068-1077.
Hoekstra RM, Dibrell MM, Weaver MN, Nelsen SF, Zink J. Three-Chromophore Excited-State Mixed Valence. Journal of Physical Chemistry A. 2009;113:456-463.
Ge YM, Luna MA, Cowan DF, Truong LD, Ayala AG. Thyrolipoma and thyrolipomatosis: 5 case reports and historical review of the literature. Annals of Diagnostic Pathology. 2009;13:384-389.
Crowther AC, Carrier SL, Preston TJ, Crim FF. Time-Resolved Studies of the Reactions of CN Radical Complexes with Alkanes, Alcohols, and Chloroalkanes. Journal of Physical Chemistry A. 2009;113:3758-3764.
Ge Y, Rybakova IN, Xu QG, Moss RL. Top-down high-resolution mass spectrometry of cardiac myosin binding protein C revealed that truncation alters protein phosphorylation state. Proceedings of the National Academy of Sciences of the United States of America. 2009;106:12658-12663.
Madsen JA, Gardner MW, Smith SI, Ledvina AR, Coon JJ, Schwartz JC, Stafford, George C. J, Brodbelt JS. Top-Down Protein Fragmentation by Infrared Multiphoton Dissociation in a Dual Pressure Linear Ion Trap. Analytical Chemistry. 2009;81:8677-8686.
Tang Y, Cole KP, Buchanan GS, Li G, Hsung RP. Total Synthesis of Phomactin A. Organic Letters. 2009;11:1591-1594.
McGivern JV, Swaney DL, Coon JJ, Sheets MD. Toward Defining the Phosphoproteome of Xenopus laevis Embryos. Developmental Dynamics. 2009;238:1433-1443.
Xiong W, Laaser JE, Paoprasert P, Franking RA, Hamers RJ, Gopalan P, Zanni MT. Transient 2D IR Spectroscopy of Charge Injection in Dye-Sensitized Nanocrystalline Thin Films. Journal of the American Chemical Society. 2009;131:18040-+.

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