All Department Publications

Found 44 results
Author Title Type [ Year(Asc)]
Filters: Author is Cavagnero, S.  [Clear All Filters]
2012
Cavagnero S, Mukerji I. Getting Places Together: How to Find and Keep a Good Mentor. Biophysical Society Newsletter [Internet]. 2012. Available from: http://www.biophysics.org/Publications/Newsletter/PastIssues/April2012/HowtoFindaGoodMentor/tabid/3915/Default.aspx
Sekhar A, Lam HN, Cavagnero S. Protein folding rates and thermodynamic stability are key determinants for interaction with the Hsp70 chaperone system. Protein Science. 2012;21:1489-1502.
Kurt N, Mounce BC, Ellison PA, Cavagnero S. Residue-Specific Contact Order and Contact Breadth in Single-Domain Proteins: Implication for Folding as a Function of Chain Elongation (vol 24, pg 570, 2011). Biotechnology Progress. 2012;28:297-297.
Sekhar A, Santiago M, Lam HN, Lee JH, Cavagnero S. Transient interactions of a slow-folding protein with the Hsp70 chaperone machinery. Protein Science. 2012;21:1042-1055.
2011
Lee JH, Sekhar A, Cavagnero S. H-1-Detected C-13 Photo-CIDNP as a Sensitivity Enhancement Tool in Solution NMR. Journal of the American Chemical Society. 2011;133:8062-8065.
Rajagopalan S, Kurt N, Cavagnero S. High-Resolution Conformation and Backbone Dynamics of a Soluble Aggregate of Apomyoglobin(119). Biophysical Journal. 2011;100:747-755.
Fedyukina DV, Cavagnero S. Protein Folding at the Exit Tunnel. Annual Review of Biophysics, Vol 40. 2011;40:337-359.
Armstrong BD, Choi J, Lopez C, Wesener DA, Hubbell W, Cavagnero S, Han S. Site-Specific Hydration Dynamics in the Nonpolar Core of a Molten Globule by Dynamic Nuclear Polarization of Water. Journal of the American Chemical Society. 2011;133:5987-5995.
2010
Ellis JP, Culviner PH, Cavagnero S. Confined dynamics of a ribosome-bound nascent globin: Cone angle analysis of fluorescence depolarization decays in the presence of two local motions (vol 18, pg 2003, 2009). Protein Science. 2010;19:1600-1600.
Fedyukina DV, Rajagopalan S, Sekhar A, Fulmer EC, Eun Y-J, Cavagnero S. Contribution of Long-Range Interactions to the Secondary Structure of an Unfolded Globin. Biophysical Journal. 2010;99:L37-L39.
Weinreis SA, Ellis JP, Cavagnero S. Dynamic fluorescence depolarization: A powerful tool to explore protein folding on the ribosome. Methods. 2010;52:57-73.
Ziehr DR, Ellis JP, Culviner PH, Cavagnero S. Production of Ribosome-Released Nascent Proteins with Optimal Physical Properties. Analytical Chemistry. 2010;82:4637-4643.
2009
Ellis JP, Culviner PH, Cavagnero S. Confined dynamics of a ribosome-bound nascent globin: Cone angle analysis of fluorescence depolarization decays in the presence of two local motions. Protein Science. 2009;18:2003-2015.
Sekhar A, Cavagnero S. EPIC- and CHANCE-HSQC: Two N-15-photo-CIDNP-enhanced pulse sequences for the sensitive detection of solvent-exposed tryptophan. Journal of Magnetic Resonance. 2009;200:207-213.
Sekhar A, Cavagnero S. H-1 Photo-CIDNP Enhancements in Heteronuclear Correlation NMR Spectroscopy. Journal of Physical Chemistry B. 2009;113:8310-8318.
Mounce BC, Kurt N, Ellison PA, Cavagnero S. Nonrandom distribution of intramolecular contacts in native single-domain proteins. Proteins-Structure Function and Bioinformatics. 2009;75:404-412.
2008
Ellis JP, Bakke CK, Kirchdoerfer RN, Jungbauer LM, Cavagnero S. Chain dynamics of nascent polypeptides emerging from the ribosome. ACS Chemical Biology. 2008;3:555-566.
Kurt N, Cavagnero S. Nonnative helical motif in a chaperone-bound protein fragment. Biophysical Journal. 2008;94:L48-L50.
Kurt N, Mounce BC, Ellison PA, Cavagnero S. Residue-specific contact order and contact breadth in single-domain proteins: Implications for folding as a function of chain elongation. Biotechnology Progress. 2008;24:570-575.
Eun Y-J, Kurt N, Sekhar A, Cavagnero S. Thermodynamic and kinetic characterization of apoHmpH, a fast-folding bacterial globin. Journal of Molecular Biology. 2008;376:879-897.
2007
Kirchdoerfer RN, Huang JJ-T, Isola MK, Cavagnero S. Fluorescence-based analysis of aminoacyl- and peptidyl-tRNA by low-pH sodium dodecyl sulfate–polyacrylamide gel electrophoresis. Analytical Biochemistry. 2007;364:92 - 94.
2006
Vega CA, Kurt N, Chen ZJ, Rudiger S, Cavagnero S. Binding specificity of an alpha-helical protein sequence to a full-length Hsp70 chaperone and its minimal substrate-binding domain. Biochemistry. 2006;45:13835.
Chow CC, Chow C, Raghunathan V, Huppert TJ, Kimball EB, Cavagnero S. Chain length dependence of apomyoglobin folding: Structural evolution from misfolded sheets to native helices. Biochemistry. 2006;78:2841-2852.
Jungbauer LM, Cavagnero S. Characterization of Protein Expression and Folding in Cell-Free Systems by MALDI-TOF Mass Spectrometry. Analytical Chemistry [Internet]. 2006;78:2841-2852. Available from: http://pubs.acs.org/doi/abs/10.1021/ac052247q
Kurt N, Rajagopalan S, Cavagnero S. Effect of Hsp70 chaperone on the folding and misfolding of polypeptides modeling an elongating protein chain. Journal of Molecular Biology. 2006;355:809-820.
Jungbauer LM, Bakke CK, Cavagnero S. Experimental and Computational Analysis of Translation Products in Apomyoglobin Expression. Journal of Molecular Biology. 2006;357:1121 - 1143.
Bakke CK, Jungbauer LM, Cavagnero S. In vitro expression and characterization of native apomyoglobin under low molecular crowding conditions. Protein Expression and Purification [Internet]. 2006;45:381 - 392. Available from: http://www.sciencedirect.com/science/article/pii/S1046592805002676
Ellison PA, Cavagnero S. Role of unfolded state heterogeneity and en-route ruggedness in protein folding kinetics. Protein Science. 2006;15:564–582.
Chen ZJ, Kurt N, Rajagopalan S, Cavagnero S. Secondary structure mapping of DnaK-bound protein fragments: Chain helicity and local helix unwinding at the binding site. Biochemistry. 2006;45:12325.
Chow C, Kurt N, Murphy RM, Cavagnero S. Structural Characterization of Apomyoglobin Self-Associated Species in Aqueous Buffer and Urea Solution. Biophysical Journal. 2006;90:298 - 309.
2005
Kurt N, Cavagnero S. The Burial of Solvent-Accessible Surface Area is a Predictor of Polypeptide Folding and Misfolding as a Function of Chain Elongation. Journal of the American Chemical Society. 2005;127:15690-15691.
Cavagnero S, Jungbauer LM. Painting protein misfolding in the cell in real time with an atomic-scale brush. Trends in Biotechnology. 2005;23:157 - 162.
2004
Rajagopalan S, Chow C, Raghunathan V, Fry CG, Cavagnero S. NMR spectroscopic filtration of polypeptides and proteins in complex mixtures. Journal of Biomolecular NMRJournal of Biomolecular NMR. 2004;29:505-516.
Rajagopalan S, Chow C, Raghunathan V, Fry CG, Cavagnero S. NMR spectroscopic filtration of polypeptides and proteins in complex mixtures. Journal of Biomolecular NMR. 2004;29:505-516.
2003
Chow CC, Chow C, Raghunathan V, Huppert TJ, Kimball EB, Cavagnero S. Chain Length Dependence of Apomyoglobin Folding:  Structural Evolution from Misfolded Sheets to Native Helices†. Biochemistry [Internet]. 2003;42:7090-7099. Available from: http://pubs.acs.org/doi/abs/10.1021/bi0273056
Cavagnero S. Using NMR to determine protein structure in solution. Journal of Chemical Education. 2003;80:125-127.
1998
Cavagnero S, Debe DA, Zhou ZH, Adams MWW, Chan SI. Kinetic role of electrostatic interactions in the unfolding of hyperthermophilic and mesophilic rubredoxins. Biochemistry. 1998;37:3369-3376.
Cavagnero S, Zhou ZH, Adams MWW, Chan SI. Unfolding mechanism of rubredoxin from Pyrococcus furiosus. Biochemistry. 1998;37:3377-3385.
1997
Misicka A, Cavagnero S, Horvath R, Davis P, Porreca F, Yamamura HI, Hruby VJ. Synthesis and biological properties of beta-MePhe(3) analogues of deltorphin I and dermenkephalin: Influence of biased chi(1) of Phe(3) residues on peptide recognition for delta-opioid receptors. Journal of Peptide Research. 1997;50:48-54.
1995
Cavagnero S, Zhou ZH, Adams MWW, Chan SI. RESPONSE OF RUBREDOXIN FROM PYROCOCCUS-FURIOSUS TO ENVIRONMENTAL-CHANGES - IMPLICATIONS FOR THE ORIGIN OF HYPERTHERMOSTABILITY. Biochemistry. 1995;34:9865-9873.
1994
Ortiz R, Marder SR, Cheng LT, Tiemann BG, Cavagnero S, Ziller JW. THE DEPENDENCE OF THE MOLECULAR FIRST HYPERPOLARIZABILITIES OF MEROCYANINES ON GROUND-STATE POLARIZATION AND LENGTH. Journal of the Chemical Society-Chemical Communications. 1994:2263-2264.
1992
Buzas B, Toth G, Cavagnero S, Hruby VJ, Borsodi A. SYNTHESIS AND BINDING CHARACTERISTICS OF THE HIGHLY DELTA-SPECIFIC NEW TRITIATED OPIOID PEPTIDE, H-3 DELTORPHIN-II. Life Sciences. 1992;50:PL75-PL78.
1991
Cavagnero S, Misicka A, Knapp RJ, Davis P, Fang L, Burks TF, Yamamura HI, Hruby VJ. DELTA-OPIOID RECEPTOR-SELECTIVE LIGANDS - D-PEN2,D-PEN5 ENKEPHALIN-DERMENKEPHALIN CHIMERIC PEPTIDES. Life Sciences. 1991;49:495-503.
1989
Bonini C, Difabio R, Sotgiu G, Cavagnero S. OXIRANE RINGS - STUDIES AND APPLICATIONS OF A NEW CHEMO AND REGIO SELECTIVE REDUCTIVE OPENING OF EPOXIDES. Tetrahedron. 1989;45:2895-2904.

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