All Faculty and Research Staff Publications

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2017
Zhang TO, Alperstein AM, Zanni MT. Amyloid beta-Sheet Secondary Structure Identified in UV-Induced Cataracts of Porcine Lenses using 2D IR Spectroscopy. Journal of Molecular Biology. 2017 ;429:1705-1721.
Kearns NM, Mehlenbacher RD, Jones AC, Zanni MT. Broadband 2D electronic spectrometer using white light and pulse shaping: noise and signal evaluation at 1 and 100 kHz. Optics Express. 2017 ;25:7869-7883.
Ostrander JS, Knepper R, Tappan AS, Kay JJ, Zanni MT, Farrow DA. Energy Transfer Between Coherently Delocalized States in Thin Films of the Explosive Pentaerythritol Tetranitrate (PETN) Revealed by Two-Dimensional Infrared Spectroscopy. Journal of Physical Chemistry B. 2017 ;121:1352-1361.
Yano Y, Kondo K, Watanabe Y, Zhang TQO, Ho JJ, Oishi S, Fujii N, Zanni MT, Matsuzaki K. GXXXG-Mediated Parallel and Antiparallel Dimerization of Transmembrane Helices and Its Inhibition by Cholesterol: Single-Pair FRET and 2D IR Studies. Angewandte Chemie-International Edition. 2017 ;56:1756-1759.
Bhattacharyya K, Liu GY, Zanni MT. "New Physical Chemistry Insight" in Experimental Bio-Physical Chemistry. Journal of Physical Chemistry B. 2017 ;121:6455-6455.
Lomont JP, Ostrander JS, Ho JJ, Petti MK, Zanni MT. Not All beta-Sheets Are the Same: Amyloid Infrared Spectra, Transition Dipole Strengths, and Couplings Investigated by 2D IR Spectroscopy. Journal of Physical Chemistry B. 2017 ;121:8935-8945.
Kratochvil HT, Maj M, Matulef K, Annen AW, Ostmeyer J, Perozo E, Roux B, Valiyaveetil FI, Zanni MT. Probing the Effects of Gating on the Ion Occupancy of the K+ Channel Selectivity Filter Using Two-Dimensional Infrared Spectroscopy. Journal of the American Chemical Society. 2017 ;139:8837-8845.
Wang JL, Shea MJ, Flach JT, McDonough TJ, Way AJ, Zanni MT, Arnold MS. Role of Defects as Exciton Quenching Sites in Carbon Nanotube Photovoltaics. Journal of Physical Chemistry C. 2017 ;121:8310-8318.
Schneider SH, Kratochvil HT, Zanni MT, Boxer SG. Solvent-Independent Anharmonicity for Carbonyl Oscillators. Journal of Physical Chemistry B. 2017 ;121:2331-2338.
McDonough TJ, Zhang LS, Roy SS, Kearns NM, Arnold MS, Zanni MT, Andrew TL. Triplet exciton dissociation and electron extraction in graphene-templated pentacene observed with ultrafast spectroscopy. Physical Chemistry Chemical Physics. 2017 ;19:4809-4820.
Ghosh A, Ostrander JS, Zanni MT. Watching Proteins Wiggle: Mapping Structures with Two Dimensional Infrared Spectroscopy. Chemical Reviews. 2017 ;117:10726-10759.
2016
Ghosh A, Serrano AL, Oudenhoven TA, Ostrander JS, Eklund EC, Blair AF, Zanni MT. Experimental implementations of 2D IR spectroscopy through a horizontal pulse shaper design and a focal plane array detector. Optics Letters. 2016 ;41:524-527.
Kratochvil HT, Carr JK, Matulef K, Annen AW, Li H, Maj M, Ostmeyer J, Serrano AL, Raghuraman H, Moran SD, et al. Instantaneous ion configurations in the K+ ion channel selectivity filter revealed by 2D IR spectroscopy. Science (Washington, D. C.). 2016 ;343:1040-1044.
O. Tianqi Z, Grechko M, D. Sean M, Zanni MT. Isotope-Labeled Amyloids via Synthesis, Expression, and Chemical Ligation for Use in FTIR, 2D IR, and NMR Studies. Methods in Molecular Biology. 2016 ;1345:21-41.
Mehlenbacher RD, McDonough TJ, Kearns NM, Shea MJ, Joo Y, Gopalan P, Arnold MS, Zanni MT. Polarization-Controlled Two-Dimensional White-Light Spectroscopy of Semiconducting Carbon Nanotube Thin Films. Journal of Physical Chemistry C. 2016 ;120:17069-17080.
Ostrander JS, Serrano AL, Ghosh A, Zanni MT. Spatially Resolved Two-Dimensional Infrared Spectroscopy via Wide-Field Microscopy. ACS Photonics. 2016 ;3:1315-1323.
Abedini A, Plesner A, Cao P, Ridgway Z, Zhang JH, Tu LH, Middleton CT, Chao B, Sartori DJ, Meng FL, et al. Time-resolved studies define the nature of toxic IAPP intermediates, providing insight for anti-amyloidosis therapeutics. eLife. 2016 ;5.
Zanni MT. Two-dimensional infrared spectroscopy measures the structural dynamics of a self-assembled film only one molecule thick. Proceedings of the National Academy of Sciences of the United States of America. 2016 ;113:4890-4891.
Mehlenbacher RD, Wang JL, Kearns NM, Shea MJ, Flach JT, McDonough TJ, Wu MY, Arnold MS, Zanni MT. Ultrafast Exciton Hopping Observed in Bare Semiconducting Carbon Nanotube Thin Films with Two-Dimensional White-Light Spectroscopy. Journal of Physical Chemistry Letters. 2016 ;7:2024-2031.
Roy S, Skoff D, Perroni DV, Mondal J, Yethiraj A, Mahanthappa MK, Zanni MT, Skinner JL. Water Dynamics in Gyroid Phases of Self-Assembled Gemini Surfactants. Journal of the American Chemical Society. 2016 ;138:2472-2475.
2015
Kratochvil HT, Ha DG, Zanni MT. Counting tagged molecules one by one: Quantitative photoactivation and bleaching of photoactivatable fluorophores. Journal of Chemical Physics. 2015 ;143.
Oudenhoven TA, Joo Y, Laaser JE, Gopalan P, Zanni MT. Dye aggregation identified by vibrational coupling using 2D IR spectroscopy. Journal of Chemical Physics. 2015 ;142.
Mehlenbacher RD, McDonough TJ, Grechko M, Wu MY, Arnold MS, Zanni MT. Energy transfer pathways in semiconducting carbon nanotubes revealed using two-dimensional white-light spectroscopy. Nature Communications. 2015 ;6.
Chan GKL, Witkowski A, Gantz DL, Zhang TQO, Zanni MT, Jayaraman S, Cavigiolio G. Myeloperoxidase-mediated Methionine Oxidation Promotes an Amyloidogenic Outcome for Apolipoprotein A-I. Journal of Biological Chemistry. 2015 ;290:10958-10971.
Ding B, Panahi A, Ho JJ, Laaser JE, Brooks CL, Zanni MT, Chen Z. Probing Site-Specific Structural Information of Peptides at Model Membrane Interface In Situ. Journal of the American Chemical Society. 2015 ;137:10190-10198.
Ho JJ, Skoff DR, Ghosh A, Zanni MT. Structural Characterization of Single-Stranded DNA Monolayers Using Two-Dimensional Sum Frequency Generation Spectroscopy. Journal of Physical Chemistry B. 2015 ;119:10586-10596.
Dunkelberger EB, Grechko M, Zanni MT. Transition Dipoles from 1D and 2D Infrared Spectroscopy Help Reveal the Secondary Structures of Proteins: Application to Amyloids. Journal of Physical Chemistry B. 2015 ;119:14065-14075.
Ghosh A, Ho JJ, Serrano AL, Skoff DR, Zhang TQ, Zanni MT. Two-dimensional sum-frequency generation (2D SFG) spectroscopy: summary of principles and its application to amyloid fiber monolayers. Faraday Discussions. 2015 ;177:493-505.
Serrano AL, Ghosh A, Ostrander JS, Zanni MT. Wide-field FTIR microscopy using mid-IR pulse shaping. Optics Express. 2015 ;23:17815-17827.
2014
Moran SD, Zhang TO, Zanni MT. An alternative structural isoform in amyloid-like aggregates formed from thermally denatured human gamma D-crystallin. Protein Science. 2014 ;23:321-331.
Moran SD, Zanni MT. Applications of Two-Dimensional Infrared Spectroscopy to Studies of Structure and Mechanism in Lens Crystallin Protein Aggregates. Biophysical Journal. 2014 ;106:40A-40A.
Grechko M, Ye YM, Mehlenbacher RD, McDonough TJ, Wu MY, Jacobberger RM, Arnold MS, Zanni MT. Diffusion-Assisted Photoexcitation Transfer in Coupled Semiconducting Carbon Nanotube Thin Films. Acs Nano. 2014 ;8:5383-5394.
Laaser JE, Christianson JR, Oudenhoven TA, Joo Y, Gopalan P, Schmidt JR, Zanni MT. Dye Self-Association Identified by Intermolecular Couplings between Vibrational Modes As Revealed by Infrared Spectroscopy, and Implications for Electron Injection. Journal of Physical Chemistry C. 2014 ;118:5854-5861.
Shea MJ, Mehlenbacher RD, Zanni MT, Arnold MS. Experimental Measurement of the Binding Configuration and Coverage of Chirality-Sorting Polyfluorenes on Carbon Nanotubes. Journal of Physical Chemistry Letters. 2014 ;5:3742-3749.
Peran I, Oudenhoven T, Woys AM, Watson MD, Zhang TQO, Carrico I, Zanni MT, Raleigh DP. General Strategy for the Bioorthogonal Incorporation of Strongly Absorbing, Solvation-Sensitive Infrared Probes into Proteins. Journal of Physical Chemistry B. 2014 ;118:7946-7953.
Moran SD, Zanni MT. How to Get Insight into Amyloid Structure and Formation from Infrared Spectroscopy. Journal of Physical Chemistry Letters. 2014 ;5:1984-1993.
Tu LH, Serrano AL, Zanni MT, Raleigh DP. Mutational Analysis of Preamyloid Intermediates: The Role of His-Tyr Interactions in Islet Amyloid Formation. Biophysical Journal. 2014 ;106:1520-1527.
Buchanan LE, Carr JK, Fluitt AM, Hoganson AJ, Moran SD, de Pablo JJ, Skinner JL, Zanni MT. Structural motif of polyglutamine amyloid fibrils discerned with mixed-isotope infrared spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 2014 ;111:5796-5801.
Abedini A, Plesner A, Cao P, Zhang JH, Meng FL, Middleton CT, Tu LH, Wang H, Song F, Rosario R, et al. Is There a Common Structural Basis for Amyloidosis Toxicity? A New Receptor-Mediated Mechanism of Pancreatic Islet Amyloidosis-Induced Beta-Cell Toxicity in Type 2 Diabetes. Protein Science. 2014 ;23:76-76.
Laaser JE, Skoff DR, Ho JJ, Joo Y, Serrano AL, Steinkruger JD, Gopalan P, Gellman SH, Zanni MT. Two-Dimensional Sum-Frequency Generation Reveals Structure and Dynamics of a Surface-Bound Peptide. Journal of the American Chemical Society. 2014 ;136:956-962.
2013
Dunkelberger EB, Woys AM, Zanni MT. 2D IR Cross Peaks Reveal Hydrogen Deuterium Exchange with Single Residue Specificity. Journal of Physical Chemistry B. 2013 ;117:15297-15305.
Moran SD, Zhang TQO, Decatur SM, Zanni MT. Amyloid Fiber Formation in Human gamma D-Crystallin Induced by UV-B Photodamage. Biochemistry. 2013 ;52:6169-6181.
Mukherjee SS, Skoff DR, Middleton CT, Zanni MT. Fully absorptive 3D IR spectroscopy using a dual mid-infrared pulse shaper. Journal of Chemical Physics. 2013 ;139.
Buchanan LE, Dunkelberger EB, Tran HQ, Cheng PN, Chiu CC, Cao P, Raleigh DP, de Pablo JJ, Nowick JS, Zanni MT. Mechanism of IAPP amyloid fibril formation involves an intermediate with a transient beta-sheet. Proceedings of the National Academy of Sciences of the United States of America. 2013 ;110:19285-19290.
Mehlenbacher RD, Wu MY, Grechko M, Laaser JE, Arnold MS, Zanni MT. Photoexcitation Dynamics of Coupled Semiconducting Carbon Nanotube Thin Films. Nano Letters. 2013 ;13:1495-1501.
Skoff DR, Laaser JE, Mukherjee SS, Middleton CT, Zanni MT. Simplified and economical 2D IR spectrometer design using a dual acousto-optic modulator. Chemical Physics. 2013 ;422:8-15.
Ding B, Laser JE, Liu YW, Wang PR, Zanni MT, Chen Z. Site-Specific Orientation of an alpha-Helical Peptide Ovispirin-1 from Isotope-Labeled SFG Spectroscopy. Journal of Physical Chemistry B. 2013 ;117:14625-14634.
Woys AM, Mukherjee SS, Skoff DR, Moran SD, Zanni MT. A Strongly Absorbing Class of Non-Natural Labels for Probing Protein Electrostatics and Solvation with FTIR and 2D IR Spectroscopies. Journal of Physical Chemistry B. 2013 ;117:5009-5018.
Carr JK, Buchanan LE, Schmidt JR, Zanni MT, Skinner JL. Structure and Dynamics of Urea/Water Mixtures Investigated by Vibrational Spectroscopy and Molecular Dynamics Simulation. Journal of Physical Chemistry B. 2013 ;117:13291-13300.
Lam AR, Moran SD, Preketes NK, Zhang TO, Zanni MT, Mukamel S. Study of the gamma D-Crystallin Protein Using Two-Dimensional Infrared (2DIR) Spectroscopy: Experiment and Simulation. Journal of Physical Chemistry B. 2013 ;117:15436-15443.

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