| Basil O'Connor Award, March of Dimes Foundation | Douglas Weibel |
| NIH Director's New Innovator Award | Douglas Weibel |
| DuPont Young Professor | Douglas Weibel |
| Sloan Research Fellowship, Alfred P. Sloan Foundation | Douglas Weibel |
| DARPA Young Faculty Award, U.S. Department of Defense | Douglas Weibel |
| Research-Service Grant Award, UW-Madison | Douglas Weibel |
| ICAAC Young Investigator Award, American Society for Microbiology | Douglas Weibel |
| 3M Non-tenured Faculty Award | Douglas Weibel |
| Searle Scholar Award, Kinship Foundation | Douglas Weibel |
| Japan Society for the Promotion of Science (JSPS) Fellow | Douglas Weibel |
| Pfizer Undergraduate Fellowship in Synthetic Organic Chemistry | Douglas Weibel |
| National Institutes of Health Postdoctoral Fellow | Douglas Weibel |
| Russell Teaching Award, College of Arts and Sciences, Cornell University | Douglas Weibel |
| National Institutes of Health Chemistry and Biology Interface Training Grant | Douglas Weibel |
| Dupont Teaching Award, Cornell University | Douglas Weibel |
| Fulbright Fellow, Japan, US Department of State | Douglas Weibel |